Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01018 ATGAAAGGAGGGTTAATTACCTTCATTTTGATTCTTGCGTTTGCTTCACCCCATTCATGTGTCGGGTTGAATCCTAAAACCAAAGACACTTTCAACGTCATGGATTATGGCGCTGTTGGTGATGGCAAATCTGATGACTCCCAAGCAATTTCAAAGGCGTGGAACGATGCATGTGGAGCAGTAACTCCAGGGACTGCAACTCTTGTTTTTCCCCAAGGGAAGACATTCTACTTGAAGCCAATGGATTTTCAGGGTCCTTGCAAGTCCAAATATATTAACATTcagaTCCAAGGGAACATACTAGCACCAACAAAAGCTGCATGGGGAAGTAAAGATAGATATATTggatttttatacataaatggTCTCTCAATCTATGGAGGAGGAGCAATCAATGGGCAGGGTTCTAGTTGGTGGAAGGAATGCACTGGAAGTTGTCAAAGACCAACTCTCATGTGTATCCATAATTGCCATGATGTAACTGTAAATGGTCTGAGGAACATTGATAGTCCAAGAAATCACATGTCCATATATTTGTGCAATGGTGTGAGAATCTCTGATCTCCATATTCAAGCTCCTGGTGAGAGCCCTGGCACAGATGGGATTAACATTGCTCTATCAGCAAACGTCAACATAGAAAGTTCCTCCATAGCAAGTGGTGATGATTGTATTTCCATGATTAATGGCACCTCTTTTGTCAATATCAGCGGGATTGCCTGTGGACCAGGCCATGGAATaagCATTGGAAGCCTTGGATCGAGCACATCTTCTTCTGACACAGTTAGAGAGGTGCATGTTCGAAATTGCAGCTTTACTGGCACCGAAAATGGTGTAAGAATCAAAACATTTcagGATAGAGTAGGCTATGTAGGGAAAGTCACTTTTGAGGAACTCACAATGATAGCACCCCATAACCCCATCATTATAGACCAGCACTACTTCAGCAAAGTAAAGGAGACCGGGGCTGTAGCAGTGAATGTGAGTGATATTACATTCCGTGGTATTCATGGAACTTGTGCTGATGAGAAAGCCATTGAGTTGAACTGCAACAAAAAGTTTGGTTGCCAAAATCTTATATTGGACAACATTAACTTAACCTCATCTGTTCCTGGAAAGAAGACAATTGCCTCTTGCTTTAATGCTCATGGAGTAGCTACATCTGTTATTCCCAGTAACCCTTGCCTGCAAAAATG 1193 0.4124 MKGGLITFILILAFASPHSCVGLNPKTKDTFNVMDYGAVGDGKSDDSQAISKAWNDACGAVTPGTATLVFPQGKTFYLKPMDFQGPCKSKYINIQIQGNILAPTKAAWGSKDRYIGFLYINGLSIYGGGAINGQGSSWWKECTGSCQRPTLMCIHNCHDVTVNGLRNIDSPRNHMSIYLCNGVRISDLHIQAPGESPGTDGINIALSANVNIESSSIASGDDCISMINGTSFVNISGIACGPGHGISIGSLGSSTSSSDTVREVHVRNCSFTGTENGVRIKTFQDRVGYVGKVTFEELTMIAPHNPIIIDQHYFSKVKETGAVAVNVSDITFRGIHGTCADEKAIELNCNKKFGCQNLILDNINLTSSVPGKKTIASCFNAHGVATSVIPSNPCLQK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01018 397 PANTHER - 11 395 - -
Bva02g01018 397 Gene3D - 22 394 IPR012334 -
Bva02g01018 397 SMART pbh1 290 311 IPR006626 -
Bva02g01018 397 SMART pbh1 207 228 IPR006626 -
Bva02g01018 397 SMART pbh1 261 282 IPR006626 -
Bva02g01018 397 SMART pbh1 180 206 IPR006626 -
Bva02g01018 397 PANTHER - 11 395 - -
Bva02g01018 397 Pfam Glycosyl hydrolases family 28 65 382 IPR000743 GO:0004650|GO:0005975
Bva02g01018 397 ProSitePatterns Polygalacturonase active site. 237 250 IPR000743 GO:0004650|GO:0005975
Bva02g01018 397 SUPERFAMILY Pectin lyase-like 27 395 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01018 Bva-Chr2 14478789 14482536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva02g01018 1 383 Glycoside Hydrolase AT5G17200 41.106 4.49e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01018 K01184 - rcu:8287292 356.295