Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g00060 ATGGCGAATTTCTCTAAGCAGTTCAGGCTCTCTTCCTCTCTGCTCAAACGGCTTAAGCGCCAGGCAATGAGTCCAAATCCTGGGCTGTTCCTGACCAGATTTTTCACTACCACCGGAGGTATTCGTCCTTCTATTGTGCACAAGCGCAGCCTCGACATTCTCCATGATCCTTGGTTCAACAGGggAACAGCTTTTACCATGACAGAACGAGACCGTCTTGATCTACGAGGACTACTTCCTCCAAATGTTATGTCTCCACAACTACAGATTGAACGCTTCATGGTTGACTTAAAGAGACTTGAAGTGCAAGCAAGAGATGGACCTTCTGATCCAAATGCGCTAGCCAAGTGGCGGATTCTTAATCGCTTGCATGACAGAAATGAGACCATGTACTATAAGGTTTTGATTGCAAACATTGAGGAATATGCACCGATAGTTTATACTCCTACTGTAGGTCTTGTATGTCAGAACTATAGTGGTCTTTTTAGAAGGCCAAGAGGAATGTATTTCAGTGCTGAAGATCGTGGAGAAATGATGTCAATGGTTTATAATTGGCCAGCTGATCAGGTTGATATGATTGTTGTCACTGATGGAAGCAGAATTCTTGGTCTTGGAGATCTTGGAGTTCAAGGCATTGGCATTGCAATTGGAAAGCTAGATTTGTATGTTGCTGCTGCTGGGATAAACCCTCAAAGGGTACTTCCTGTCATGATTGACGTTGGGACTAACAACGAGAAACTACTTGAAGATCCCTTATATTTAGGATTACAACAACACCGTCTCGATGGGGATGAGTATCTTGCTGTTATAGATGAATTCATGGAGGCTGTCTTTACCCGCTGGCCACATGTGATTGTGCAGTTTGAAGACTTCCAAAGCAAATGGGCATTTAAGTTGTTACAACGTTATAGAGGCACCTATAGAATGTTCAATGATGATGTGCAGGGAACAGCTGGGGTTGCAATTGCTGGACTTCTAGGTGCTGTAAGAGCACAAGGACGGCCAATGATTGACTTCCCAAAGCAGAAGATAGTTGTTGCTGGTGCTGGAAGTGCTGGAATTGGGGTTCTTAATGCTGCAAGAAAAACAATGGCAAGGATGTTGGGTAATAATGAAAGAGCTTTTGAGAGCGCAAAGAGTCAATTCTGGGTTGTTGATGCAAAGGGTCTGATCACAGAAGCACGTGAAGATATTGATCCAGATGCTCAACCTTTTGCAAGAAATGTGAAAGAAATTGATCGTCAAGGACTAAGGGAGGGTGCAAGCCTTGTGGAAGTGGTCAAGCAAGTGAAGCCTGATGTGCTTCTAGGATTATCTGCTGTGGGAGGATTGTTCTCAAGCGAGGTATTAGAGGCTCTTAAGGGCTCAACTTCAACAAGACCAGCCATATTTGCCATGTCAAACCCCACAAAGAACGCTGAATGCACCCCTGACGAagcattttccattttgggTGAAAACATTATATTTGCAAGTGGAAGTCCATTCAAGGATGTGGATCTTGGAAATGGGCATATTGGTCACTCCAACCAAGGAAACAACATGTACCTCTTTCCAGGCATTGGCCTCGGAACTCTTTTATCCGGCTCTAGGATCATCTCAGATGGTATGCTACAGGCTGCTGCTGAGTGTTTGGCTGCATATATGAGTGAAGAAGAGGTCCTCAAAGGAATTTTATATCCTTCAATATCTAGAATACGAGATATAACAAAGGAGGTAGCTGCAGCTGTTGTAAAGGAAGCCATAGAAGAAGATCTAGCTGAAGGATACCAAAATATGGATGCCCGCGAGCTTCGCAAACTTAATCagGAAGAAATACGGGAATATGTGAAGAATAGGATGTGGAGTCCAAGGTACTCAGCACTCGTTTACAAGAAAGATTA 1883 0.4323 MANFSKQFRLSSSLLKRLKRQAMSPNPGLFLTRFFTTTGGIRPSIVHKRSLDILHDPWFNRGTAFTMTERDRLDLRGLLPPNVMSPQLQIERFMVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNETMYYKVLIANIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLEDPLYLGLQQHRLDGDEYLAVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLLQRYRGTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNERAFESAKSQFWVVDAKGLITEAREDIDPDAQPFARNVKEIDRQGLREGASLVEVVKQVKPDVLLGLSAVGGLFSSEVLEALKGSTSTRPAIFAMSNPTKNAECTPDEAFSILGENIIFASGSPFKDVDLGNGHIGHSNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLAAYMSEEEVLKGILYPSISRIRDITKEVAAAVVKEAIEEDLAEGYQNMDARELRKLNQEEIREYVKNRMWSPRYSALVYKKD 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g00060 627 SMART Malic_M_2 314 582 IPR012302 GO:0051287
Bva02g00060 627 Gene3D - 312 627 - -
Bva02g00060 627 PANTHER MALIC ENZYME 38 623 - -
Bva02g00060 627 PIRSF ME 12 625 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 CDD NAD_bind_1_malic_enz 314 617 - -
Bva02g00060 627 ProSitePatterns Malic enzymes signature. 310 326 IPR015884 GO:0004471
Bva02g00060 627 Pfam Malic enzyme, NAD binding domain 314 582 IPR012302 GO:0051287
Bva02g00060 627 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 314 623 IPR036291 -
Bva02g00060 627 Pfam Malic enzyme, N-terminal domain 124 304 IPR012301 GO:0004471
Bva02g00060 627 Gene3D - 48 311 IPR037062 GO:0004471
Bva02g00060 627 PANTHER MALIC ENZYME-RELATED 38 623 - -
Bva02g00060 627 PRINTS Malic enzyme signature 285 303 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 344 360 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 458 474 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 130 154 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 190 219 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 226 248 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 PRINTS Malic enzyme signature 310 326 IPR001891 GO:0004470|GO:0004471
Bva02g00060 627 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 40 313 IPR046346 -
Bva02g00060 627 SMART malic_2 124 304 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g00060 Bva-Chr2 1019413 1049872 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g00060 K00028 - pop:7483786 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00060 02 1019413 1049872 Bva02g00060 02 1019413 1049872 ECH