Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01859 ATGTGGGCCAGCTCAGTCAGGAGAGCTTCCTCAAGGAAGTTCAAGTTGCCTTCTTCAAGTCTTACCGAATTCTCCAAAGAATCGAATTTTCTCGAGAAAATAAGGCCACCCGAGAACATAACGCGTGTATACTCTAGTTACCCAGTTCTGGGTTCGAGGAAAGTTTGTTTTTTAGCTTCGGAACATCTACTAAGGAGACCCAGTTTTTGGCCTTGTGAATAcccttttggtttttctttatctaGAGGTTATGCTGGAGTTGCTGAGGCCGTTGTTTCCACAGATACTGAAGAAGATCTTTCTGGGTTGGAGGAAATTCATGAATTGTTTGaggaaatgaataaagaaGTCTCGGGACAACCTCATTTAGAGCAGCCAAAGAATATGGGGGCGGGTATGCCAATCTATAAGTATAAATTGCTTAGGAAAAGGCAGATAAAGTTGGAAACAGAAGCATGGGATGAGGCAGCCAAAGAATATCAAGAACTTCTGGCGGATATGTGTGAGCAGAAACTTGCACCAAATTTGCCTTATATGAAGTCGTTATTCCTTGGTTGGTTTGAGCCCTTTAGGGAAGCAATTGCTGCGGACCAAGAGCTGAGCAAAAAGAATAAGCATAAGTTGACTCATGCTCCTTATTTTGATAAGTTACCAGCAGACATGATGGCTGTTATTACCATGCATAAGTTGATGGGGTTGTTGATGACGAATACTAATGGGATAGGCAGTGCTCGAGTAATCGCAGCCGCATGTCAAATAGGCGAAGCCATAGAACATGAGGCTAGAATATACAGATTtatggagaagaaaaaggagaaaatgaagaagagtGCAAATGCCGACAACCCTATCAATAAATCTGATTCTGCGACTGTAGGAGTCGGAGAGCTGGCTgaagaacaagagaaaatggTTACAGAGCAGGAGAAACTAAGGAGAAGAGttgctaatttaattaaaaaacagaaGATGAAACAGGTGATACgaatagtaaaagaaaatgatgattcAAAGCCTTGGGGACAGGAAGGTCAAGTAAAGGTTGGCTGCCGCCTGATGCAACTGTTAATGGAGACAGCCTACATACAACCCCCACTGGATCAATTGGGAGATGGTCCACCAGACATACGCCCTGCATTTAAGCACACTTTTAAAACCGTTGCATCAGAATCCCAGAACCAAAGTAGGAAATATGGTGTTATTGAATGTGACCCCTTAATCCTGAAAGGCCTTGAGAAAACTGCCAGGCACATGGTCATCCCATATATGCCAATGTTGGTGCCACCTCTTAAGTGGACAGGGTATGACAAAGGGGCACACTTGTTTTTGCCATCTTATGTTATGCGAACACATGGAGCAAAGCAACAACGTGAAGCAGTTAAGAGGGCTCCAAAGAAGCAGCTAGAACCAGTTTTTGAGgCCCTTGATTACCTTGGAAATACCAAATGGAGGGTAAACAAAAGGGTCCTCAGTGTGATAGATCGGATATGGGCTAGTGGAGGGCGTCTTGCTGACTTGGTGGACCGTGAAGATGTTCCTATTCCAGAGGAACCAGACACAGAAGATGAAGCAGAAATTCGAAAATGGAAGTGGAAAGTCAAAGCTGccagaaaggaaaataatgagaaaCATTCACAGCGGTGTGACATAGAACTTAAACTTGCTGTTGCACGGAAGATGAAGAATGAGGAAGGGTTCTACTATCCTCACAACCTTGATTTCCGAGGGCGTGCATATCCCATGCACCCTTATTTAAACCATCTTGGTTCTGATTTATGCCGAGGCATACTGGAATTTGCAGAGGGACGGCCTTTAGGAAAGTCAGGCTTGCGCTGGTTGAAGATACATTTGGCAAATTTGTATGCAGACCAGCCTCTTGAGGGAAGACGTTGGTGGTTGGAAGCAGAGGATCCTTTTCAGTGCTTGGCTGCATGCATTAATCTCTCTGAAGCATTGCGAAGCCACTGTCCTGAGGCTGCTATTTCACATATGCCTGTCCACCAGGATGGTTCATGCAATGGCTTACAACACTATGCGGCCCTTGGGAGGGACAAGttgGGAGCCTCTGCGGTTAATCTTGTTGGTGGAGACAAGCCTGCTGATGTTTACTCAGGAATTGCTGCCAGAGTACTTGATATCATGAGAAGAGATGCAGAAAAAGATCCTCAAACTAATCGAAATGCATTGCATGCAAGACTTTTAATAAACCAGGTAGATCGGAAATTGGTGAAACAGACAGTAATGACATCAGTCTATGGTGTGACTTATATTGGTGCTCGGGACCAAATCAAGAGAAGGCTGAAAGAACGTGGCACTATTGAGGATGATTCGGAATTGTTTGCTGCTTCCTGCTATGCGGCAAAAACCACCTTGACTGCTTTGGAAGAGATGTTTGAGGCTGCAAGAAGTATCATGAATTGGCTTGGAGATTGTGCAAAGGTGATAGCTTCAGAGAATCAACCAGTACAGTGGGTCACTCCACTCGGGCTTCCAGTCGTACAACCTTACAGACAATTTGGAAGACatcttATTAAGACTTCCCTTCAGGTGTTGACACTAAAAAGGGAGACTGATAAGATCATGGTTAAGCGGCAGAGAACAGCTTTTCCTCCAAATTTTGTTCATTCTCTTGATGGGTCTCACATGATGATGACTGCTATTGCTTGTAAAAGAGCAGGATTGAACTTTGCAGGAGTACACGATTCATATTGGACGCATGCATGTGATGTTGACACAATGAACAGGATACTCAGGGAAAAGTTTGTCGAACTCTACGAGGCCCCAATACTGGAAAATCTGTTGGATGGCTTTGAAAAGTCTTTCCCCACATTGCAGTTTCCCCCCTTACCGGAGAGGGGTGACTTCAATTTGAGAGAGGTTCTGGAGTCTActtattttttcaacta 2906 0.4202 MWASSVRRASSRKFKLPSSSLTEFSKESNFLEKIRPPENITRVYSSYPVLGSRKVCFLASEHLLRRPSFWPCEYPFGFSLSRGYAGVAEAVVSTDTEEDLSGLEEIHELFEEMNKEVSGQPHLEQPKNMGAGMPIYKYKLLRKRQIKLETEAWDEAAKEYQELLADMCEQKLAPNLPYMKSLFLGWFEPFREAIAADQELSKKNKHKLTHAPYFDKLPADMMAVITMHKLMGLLMTNTNGIGSARVIAAACQIGEAIEHEARIYRFMEKKKEKMKKSANADNPINKSDSATVGVGELAEEQEKMVTEQEKLRRRVANLIKKQKMKQVIRIVKENDDSKPWGQEGQVKVGCRLMQLLMETAYIQPPLDQLGDGPPDIRPAFKHTFKTVASESQNQSRKYGVIECDPLILKGLEKTARHMVIPYMPMLVPPLKWTGYDKGAHLFLPSYVMRTHGAKQQREAVKRAPKKQLEPVFEALDYLGNTKWRVNKRVLSVIDRIWASGGRLADLVDREDVPIPEEPDTEDEAEIRKWKWKVKAARKENNEKHSQRCDIELKLAVARKMKNEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYADQPLEGRRWWLEAEDPFQCLAACINLSEALRSHCPEAAISHMPVHQDGSCNGLQHYAALGRDKLGASAVNLVGGDKPADVYSGIAARVLDIMRRDAEKDPQTNRNALHARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGTIEDDSELFAASCYAAKTTLTALEEMFEAARSIMNWLGDCAKVIASENQPVQWVTPLGLPVVQPYRQFGRHLIKTSLQVLTLKRETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKRAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYEAPILENLLDGFEKSFPTLQFPPLPERGDFNLREVLESTYFFN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01859 968 Pfam DNA-dependent RNA polymerase 622 968 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva01g01859 968 Gene3D - 573 625 - -
Bva01g01859 968 Gene3D - 135 480 IPR037159 -
Bva01g01859 968 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 738 752 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva01g01859 968 SUPERFAMILY DNA/RNA polymerases 137 968 IPR043502 -
Bva01g01859 968 Gene3D - 626 655 - -
Bva01g01859 968 PANTHER DNA-DIRECTED RNA POLYMERASE 13 622 - -
Bva01g01859 968 PANTHER DNA-DIRECTED RNA POLYMERASE 622 968 - -
Bva01g01859 968 SMART RPOL_N_2 143 480 IPR029262 -
Bva01g01859 968 Gene3D - 481 563 IPR024075 GO:0003899
Bva01g01859 968 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 665 676 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva01g01859 968 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 13 622 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva01g01859 968 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 622 968 IPR002092 GO:0003677|GO:0003899|GO:0006351
Bva01g01859 968 Pfam DNA-directed RNA polymerase N-terminal 144 480 IPR029262 -
Bva01g01859 968 Gene3D - 686 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g01859 Bva-Chr1 19090513 19099553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01859 K10908 - jre:108989412 1474.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01859 01 19090513 19099553 Bva01g01859 01 19090513 19099553 ECH