Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g01847 ATGAAAGCTCGTGTATTATGTGCTGGTAACAGTTTCACCTCCATAACCAGTAGCTCGAAGCACACCAGGATATTGTTTCCCTATGCATCAAATTCTATTACATTTCTCAGCGGGAATTCTCGCTCCTTTAAGCTCCTTGTAAGGAGAAATAGCTATGAGATTGTTGAAGGAGTGAGGTATGACGGTCCTGCAATTCAAATTGATGATATTTCCAATTGCGAGGATGGTGATTTGAGGTTCGAGAACTGCATTACGCGAACATTGTCTCCGGCGTTGACATTGGAGGAGGGGCTTGAGAAAATCAACGAGGCTGTTCAAACTTTGAAGTTGGATCCTCCTTGTGGTTCTAGTGGGTTCCTTAGGTTTCAGGTGGCTGTCCCTCCAAGTCCTAAAGCTTTATGTTGGTTTTGCTGTCAACCGGAGTCATCTCAAGTGTATCCGctgatttttatttcaaagaatAGAGACAATCCAATGCATAAATCACTGCAAGTGAATGGAAACCGTGGAGTTTTTGGAATTGGtgcttctgtttcttttaCACATTCTTCTCCTCTTAAGAATGGAAAGCAGAGTCATACTAAAAGATATATCTCAAGTGACTCAGCGGCTATAGTGGCCTATGGTCTTAtggatattaattttgataaagagTCATTTTCCGTGAGTCATGAGGATggttctttttactttttcattccTCAGATTGAGTTAGACGAGCAGGAGTGTATTTCCATTTTGACAGCAACACTTGCATGGGATGACTCTTCCCTCTCTACTTTAAATGAATCCCTTCAGTCActtgaattttctcttaacCAGGTAATATGTCATATGTGGCCTACTAATGCTACATGGCGACCAAATGGCATAAGATCTGCACtcagaaaattgaatttggtTGAGGATAGATCTATTCCAAGGGTGTACATGAACACTACAGCTCCGGGAGGAAGAGACAGCTTACATGACGTCATTGAACTGAATGAATCTCCATCTTCCTGTCAATTTTGCATCAGGTTTTCACCGGGCCTTTCTGTTGCAAGTAATATGTTGGATCATGATGATGTGTCGTTCTCATTAGAAAAAAGTGCCAATATTAATGCTGTTTGGGCATCACTTATTGTTGAAGAATGCTTACGACTTGGTTTGACGTATTTTTGTATAGCTCCGGGATCAAGGTCTTCCCCACTTGCTGTTGCTGCTTCAACCCATCAGTCAATCACATGCATTTCATGCTTTGATGAGCGTTCACTTGCATTTCATGCTGTTGGTTATGCACGAGGATCTCACATTCCAGCTGtagtcataacatcatcaggAACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTGGAGGCTAGTCAAGATTTTGTACCACTTCTTTTACTTACAGCAGATCGACCTCCGGAGCTGCTTGAATGTGGAGCAAACCAAGCAATTGATCAGGTAAATCATTTTGGTTCTTTCGtgagatttttcttcaatcttcCGGCTCCCACAGATCAGATTCCAGCCAGGATTGTACTTACTACTCTTGATTCTGCTGTACATTGGGCTACTTCTTCACCTTCTGGTCCAGTCCATATTAACTGCCCATTCAGAGAGCCACTTGAAAACAGCCCCAGTGTATGGACATCAAACTGTTTAAAGGGCTTAGACTATTGGTTTACTAATGCTGAACCATTTACCAAGTATATCAATATGCAATTGTCTCATGCTAGTAATAATGCCACTGGCCAAATGAGTGAGGTTTTAAATCTGATTCCAAAGGCAAAAAACGGTCTTCTACTCATCGGTGCAATCCATGCAGAGGATGAGATGTGGGCTGCTTTTCTTTTGGCTAAGCATCTTCGGTGGCCTGTTGTAGCAGATATCTTGTCAGGCTTACGGTTAAGAAAgattttaacttcttttacTGATATTGAAGATGACTTCATATTTATTGATCATCTTGATCATGCTCTACTGTCTGATTCTGTGAAGTGCTGGTTAGAGATTGACGTAGTTATTCAGCTTGGAAGCAGGGTGACTAGCAAACGAATCTGTCAGATGCTTGAGGAGTGTGTTCCTTTTTCATATGTTATGGTTGACAAGCATCCACATCGTCATGATCCTTCACATATTCTAACACATCGTATACAAAGTAGCATTACTAATTTCGTGGGTTGTTTACTAAAGGTCAAAGTTCCACGCTTGAGGAGCCAGTGGAGCACATCCCTATTAATGTTGAGTAAGATGGTTGAATGGGAGATACTGTTTCAAATTTGTGCTGAGAGAGCCCTGACTGAACCTCACGTTGCACATATACTGTCTGAAGCGCTTTCCTCTGAATCTGCTCTCTTTCTTGGAAACAGTATGGCGATTCGTGATGCAGATATGTATGGACGTAGTTGGTCCATATGCAGTCTAAGCGTTACATCTCAAATGTTAAATTTAGACCTACCATGTAACTGGATAAGGGTGGCTGGGAACAGGGGGGCAAGTGGTATTGATGGGCTACTTAGCACAGCCATTGGCTTTGCTGTAGGAAGCAACAAAAAGGTACTCTGTGTGATTGGAGATGTTTCTTTACTGCACGACACAAACGGCTTGGCAATGTTGAACCAGGGctGTAGGGAATTGCGGAAGCCAATGACAATACTGGTGTTGAATAACCATGGAGGTGcaattttcagttttcttcCCTTGGCAAATAAAACTGAACCAAGTATACTGCGTCGATATTTCTACACCTCTCATGACATTTCTATCTACGGTCTATGCCTTGCACATGGCATAAAGCATTTACATGTGCAGACAAAGATGGAACTTGAACATGCATTGCTTGCGGCACAACAAGAAGAGATGGATTgtataattgaaattgaaagttcAATTGATGCTAATGCTAATTTTCACAGtattttgagaaaatttgcTCTCCAGACTGGAGAACACACCATAAGATCCCTCTCATTGTCTTTCAGTCAAAGCTTTACGAAAAGCGAGTTTTTCAGAATTCATAAAATAGAGTATTCGCGATATAGAATCGCATTGTGTGCTCCACCAACATCAACATCTATTGGTCATGATCATAATGAGTTCTATAGGGaaggatttattttatctttattccTTGAAGATGGGAGTTCTGGTTTTGGTGAGGTTGCACCCCTTGAGATCCACAGGGAAACTCTAGTAGACGCAGAAGACCAACTTAGGTTTCTTATACATGCCTTGGAAGAAGTCAAGATTAGTTGCTTCCTATCTGTAATGAAGGGTTCATTCTCCTATTGGTTATGGAAGGAATTGGGTATCGTGCCATGTTCTATCTTTCCAAGTGTCAGATGTGGTTTGGAAATGGCTATCCTCAATGCCATAGCTCGTGCAAACAGCTCCAACTTACTGAACACACTCCATCCCCagacaaaggaagaagacAAACACAAAAGGTCATCTGAAGTTCAGATCTGTGCTTTGGTTGATTCAAATGGATCTGTGGCTGAAGTAGCTAATGTTGCAGCTGCACTCGTCGAGGAAGGATTTGCAGCAATTAAACTGAAGGTAGCTCGTGAGGGTAATCCAATGCACTCTGCTGTATTAATACAAGAAGTGAGAAAGAAAGTTGGTCCTCATGTTGACATCCGTGCAGATGCAAATCGAAAATGGACTTACGAAGAAGCTATGGAATTCAGCTCTTTTGTTAAGGATACTGACCTAAAATATATCGAGGAGCCTGTTCAGGATGAAGAAGACATTATCAGGTTCTGTGAAGAAAGTGGCTTACCTGTTGCACTCGATGAAACCATTGACAACATTCAAGAAAATCCACTGGAAAAGCTAGTGAAGTTTACTCACCCAGGAATAGTTGCCGTTGTTATCAAGCCTAGTGTCGTTGGTGGATTTGAGAATGCAGCATTAATTGCACAATGGGCTCAACAGCTGGGGAAGATGGCAGTTGTCAGTGCTGCATTTGAAAGCAGTTTAAGTTTATCTGCATATGTTCagttttcttgtttccttGAAATGCAGAACACCAGTACATCCGAAGTCTTAAATCATAAGGCAGCCCCATCTGTAGCCCATGGTCTAGGAACCTATCGCTGGCTCAAGGAAGATGTAACATCTAATCCTCTCTTGATAGGTCGTAATCAAGACAGTGGTTTTATTGAAGCATCTGTGGCGAATGCTAGTCAACTGCTACATGATTTTCAAGTCAATCAGAATGTCATCTCTAATAATGTTGCTGGGGAGCAAGTTCGTAGGTACCAATTGACTGTAGAACACAAAAGTTTCCCCTTTGTCTTTGAAGTACAAGAGATTGGACAAAAGACTGATGataatgtaataatatttcttcatGGTTTTCTTGGTGCTGGTGAAGACTGGGTTGCTATCATGAAGGCCATTTCAGGATCCGCTAGATGCATTTCAATTGACCTTCCTGGTCACGGGAAATCAGTTATACATGGTGAAAAGGATGGAAAGGAGGTACCATGGTTGTCACTCGAGACGATTGCTGATGTATTACATAAACTAATTCATCATATCACTCCAGCGAAAGTTACACTTGTTGGCTATTCAATGGGAGCAAGGATTGCTTTGTACATGGTACTGAGGTATAGTGATAAGGCCAAAGGAGCTGTCTTGATATCTGGAAGCCCTGGTTTAAAAGATGAATCAGCTAGAAAAATTCGTACCCCTAAGGACGATTGCAGGGCGCGATCCATGATTCAGCACGGTTTAAAGCTTTTTGTCAATTCCTGGTATGCAGGAGAGCTATGGAAAAGCTTACGAAGCCATCCCCATTTCAATCGAATCATTGCAAGTCGCTTGCAGCATGGTGACGTGCAGGGTCTTGCAAAGATGCTGTCTGGCTTAAGCATAGGGAGGCAGCCATCACTGTGGGATGATTTGAAGGCTTGCAGAATACCTCTCCTTATTATATACGGAGAGAAGGATactaaatttaagaaaatttctgAGGAAATGAGGAATGCAATCAACTCTGGCTTGGAGGGTAGGCATGAAAAATGGAAGGACATCCATAAGGTGGTTGAGATTCCCAAGTGTGGGCATGCTGCCTATTTGGAGAAccctcttcctatcattgctGCCTTGAGAAAGTTCATGACAAGACTTGAAGAGGTATATATTACAAAGAGCAACAATAAAAACCGTTGTGTGTA 5171 0.397 MKARVLCAGNSFTSITSSSKHTRILFPYASNSITFLSGNSRSFKLLVRRNSYEIVEGVRYDGPAIQIDDISNCEDGDLRFENCITRTLSPALTLEEGLEKINEAVQTLKLDPPCGSSGFLRFQVAVPPSPKALCWFCCQPESSQVYPLIFISKNRDNPMHKSLQVNGNRGVFGIGASVSFTHSSPLKNGKQSHTKRYISSDSAAIVAYGLMDINFDKESFSVSHEDGSFYFFIPQIELDEQECISILTATLAWDDSSLSTLNESLQSLEFSLNQVICHMWPTNATWRPNGIRSALRKLNLVEDRSIPRVYMNTTAPGGRDSLHDVIELNESPSSCQFCIRFSPGLSVASNMLDHDDVSFSLEKSANINAVWASLIVEECLRLGLTYFCIAPGSRSSPLAVAASTHQSITCISCFDERSLAFHAVGYARGSHIPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADRPPELLECGANQAIDQVNHFGSFVRFFFNLPAPTDQIPARIVLTTLDSAVHWATSSPSGPVHINCPFREPLENSPSVWTSNCLKGLDYWFTNAEPFTKYINMQLSHASNNATGQMSEVLNLIPKAKNGLLLIGAIHAEDEMWAAFLLAKHLRWPVVADILSGLRLRKILTSFTDIEDDFIFIDHLDHALLSDSVKCWLEIDVVIQLGSRVTSKRICQMLEECVPFSYVMVDKHPHRHDPSHILTHRIQSSITNFVGCLLKVKVPRLRSQWSTSLLMLSKMVEWEILFQICAERALTEPHVAHILSEALSSESALFLGNSMAIRDADMYGRSWSICSLSVTSQMLNLDLPCNWIRVAGNRGASGIDGLLSTAIGFAVGSNKKVLCVIGDVSLLHDTNGLAMLNQGELRKPMTILVLNNHGGAIFSFLPLANKTEPSILRRYFYTSHDISIYGLCLAHGIKHLHVQTKMELEHALLAAQQEEMDCIIEIESSIDANANFHSILRKFALQTGEHTIRSLSLSFSQSFTKSEFFRIHKIEYSRYRIALCAPPTSTSIGHDHNEFYREGFILSLFLEDGSSGFGEVAPLEIHRETLVDAEDQLRFLIHALEEVKISCFLSVMKGSFSYWLWKELGIVPCSIFPSVRCGLEMAILNAIARANSSNLLNTLHPQTKEEDKHKRSSEVQICALVDSNGSVAEVANVAAALVEEGFAAIKLKVAREGNPMHSAVLIQEVRKKVGPHVDIRADANRKWTYEEAMEFSSFVKDTDLKYIEEPVQDEEDIIRFCEESGLPVALDETIDNIQENPLEKLVKFTHPGIVAVVIKPSVVGGFENAALIAQWAQQLGKMAVVSAAFESSLSLSAYVQFSCFLEMQNTSTSEVLNHKAAPSVAHGLGTYRWLKEDVTSNPLLIGRNQDSGFIEASVANASQLLHDFQVNQNVISNNVAGEQVRRYQLTVEHKSFPFVFEVQEIGQKTDDNVIIFLHGFLGAGEDWVAIMKAISGSARCISIDLPGHGKSVIHGEKDGKEVPWLSLETIADVLHKLIHHITPAKVTLVGYSMGARIALYMVLRYSDKAKGAVLISGSPGLKDESARKIRTPKDDCRARSMIQHGLKLFVNSWYAGELWKSLRSHPHFNRIIASRLQHGDVQGLAKMLSGLSIGRQPSLWDDLKACRIPLLIIYGEKDTKFKKISEEMRNAINSGLEGRHEKWKDIHKVVEIPKCGHAAYLENPLPIIAALRKFMTRLEEVYITKSNNKNRCV 1721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g01847 1721 TIGRFAM menC_gamma/gm+: o-succinylbenzoate synthase 1028 1345 - -
Bva01g01847 1721 SFLD o-succinylbenzoate synthase 999 1373 - -
Bva01g01847 1721 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 171 1706 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bva01g01847 1721 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 814 952 IPR011766 GO:0003824|GO:0030976
Bva01g01847 1721 Pfam Enolase C-terminal domain-like 1165 1343 IPR029065 -
Bva01g01847 1721 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 365 972 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bva01g01847 1721 Gene3D - 574 753 - -
Bva01g01847 1721 Pfam Middle domain of thiamine pyrophosphate 549 783 IPR032264 -
Bva01g01847 1721 Gene3D - 998 1135 IPR029017 -
Bva01g01847 1721 SFLD Enolase 999 1373 - -
Bva01g01847 1721 Pfam alpha/beta hydrolase fold 1440 1692 IPR000073 -
Bva01g01847 1721 Gene3D alpha/beta hydrolase 1429 1704 IPR029058 -
Bva01g01847 1721 CDD TPP_PYR_MenD 373 534 - -
Bva01g01847 1721 SUPERFAMILY alpha/beta-Hydrolases 1430 1705 IPR029058 -
Bva01g01847 1721 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 365 543 IPR029061 -
Bva01g01847 1721 SUPERFAMILY Enolase C-terminal domain-like 1157 1373 IPR036849 -
Bva01g01847 1721 Gene3D - 1136 1378 IPR036849 -
Bva01g01847 1721 Gene3D - 761 971 - -
Bva01g01847 1721 Hamap 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 1428 1704 IPR022485 GO:0009234|GO:0070205
Bva01g01847 1721 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 373 539 IPR012001 GO:0030976
Bva01g01847 1721 SUPERFAMILY DHS-like NAD/FAD-binding domain 527 739 IPR029035 -
Bva01g01847 1721 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1207 1238 IPR018110 GO:0009063
Bva01g01847 1721 CDD TPP_SHCHC_synthase 762 957 - -
Bva01g01847 1721 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 800 956 IPR029061 -
Bva01g01847 1721 TIGRFAM menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 371 843 IPR004433 GO:0009234|GO:0030976|GO:0070204
Bva01g01847 1721 SUPERFAMILY Enolase N-terminal domain-like 1029 1120 IPR029017 -
Bva01g01847 1721 SMART MR_MLE_2 1159 1255 IPR013342 -
Bva01g01847 1721 Gene3D - 363 560 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g01847 K14759 - gmx:100798570 2344.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g01847 01 18977606 18994375 Bva01g01847 01 18977606 18994375 ECH