Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00332 ATGTCTGGTCACTGGGGAATTGTTGTTTCAGATCCATGGCTTCAAAATCAGTTCACCCAAGTCGAGCTTCGAAGCTTAAAAACCCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTACGATTGGGGATTTGGCTTCCAAGATGTCAAGGTTGAAAGTTGTGGGAGAGAATCTGAGTGAGGAAGAGAGAGCTTCTTTTATTCAGGATTTGCATCAGAACACTGACGAGGATGctgattttgaattatttctcAAGGTTTACTTGAAACTACAAGCTTTCGCAAGTTCTAGAATAGGAAGTAGCCCCAAGAACTCTTCAGCTTTTCTCAAGGCTGCTACCACCACATTGCTTCATACAATCAGTGAATCAGAGAAGGCATCATATGTTGaacatataaataactatCTTGCAGAAGATGAGTTCCTCAAGAGATACCTTCCTATTGATCCTTCAAGCAATGATCTCTTTGAGATTGCAAAAGATGGTGTCCTTCTTTGTAAGCTTATCAATGTGGCAGTTCCGGGAACAATCGATGAACGGGCGATTAACACGAAAAGATTACTCAATCCATGGGAAAGGAATGAAAACCACACACTTTGCCTTAACTCTGCTAAAGCAATTGGATGCACAGTAGTCAATATTGGCACTCAGGACTTCATTGAAGGAAGGCGCCACCTCGTGCTCGGATTGATTTCACAGATCATTAAGATACAATTATTGGCAGACCTCAACCTAAAGAAAACTCCTCAGTTGGTGGAATTAATTGGTGATAGTAAGGACATGGAAGAGTTGATGAGTCTACCACCAGAGAAAATCTTGCTAAGGTGGATGAACTTCCATTTGAAGAAAGCAGGTTATAAGAAGATAGTCACAAACTTCTCCTCTGATGTAAAGGATGCCGAGGCTTATGCTCACCTTCTAAATGTTCTTGCACCTGAATATACTAATCCATCCACTTTGGCAGTCAAAAATCCCTTTGAAAGAGCCAAGTTAGTTCTTGAACATGCTGATAAGATGGGTTGCAAGCGATATTTAACCGCAAGAGACATCGTGGAAGGCTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATATTCCAGCTTAGGAATGGGCTTCCAACCCAAACAAAACAGATATCTCTCCTTGAAACATTGCCCGATGACACTCAAGActcaagagaagagagagcaTTTCGTCTCTGGATTAATAGTCTTGGCAATTCAACATACATCAACAATGTCTTTGAGGATGTCAGAAATGGGTGGGTGCTTTTGGAGACCCTTGAAAAGGTATCTCCAGGGATTGTTAATTGGAAGATTGCTAACAAGCCACCAATCAAGATGCCATTTAAGAAAGTGGAGAACTGCAATCAAGTGGTGAAAATAGGgaaacaacttaaattttccCTGGTAAACATTGCTGGTAATGACATTGTGCagggaaataaaaaactaatacTAGCTTATTTGTGGCAATTGATGAGATACAACATCCTACAACTGCTAAAGAACTTGAGATATCACTCTCatgggaaagaaataaatgatgcTGATATCTTGCAATGGGCCAACAGCAAAGTCAGCAGCTCTGGAAGCCAAAGCCGCATGGATAGTTTTAAGGACAAAAGTTTGTCAGATGGGATCTTTTTCCTTGAGCTTCTTAGCTCAGTTCAGCCTAGAGCTGTAAACTGGGGCCTTGTAACAAAAGGAGTGACTGATgaggagaaaaagatgaaCGCCACCTACATTATCAGCATTGCAAGGAAGCTCGGATGTTCCATATTTTTACTTCCAGAAGACATTACCGAGGTGAATCAAAAGATGATCCTAACATTAACAGCAAGTATAATGTACTGGTTCTTAAAACACCCTGCTGAAGAGAGGACAGCAGGAACTTCAGACAGTGAGACTGTATCAAATTCAACAGTAGATGACTCTTCTTCTGATTCATCCTTGGAGGAGAATGGGAATATGTA 1979 0.3896 MSGHWGIVVSDPWLQNQFTQVELRSLKTHFMSMRRESGRLTIGDLASKMSRLKVVGENLSEEERASFIQDLHQNTDEDADFELFLKVYLKLQAFASSRIGSSPKNSSAFLKAATTTLLHTISESEKASYVEHINNYLAEDEFLKRYLPIDPSSNDLFEIAKDGVLLCKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLVELIGDSKDMEELMSLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQLRNGLPTQTKQISLLETLPDDTQDSREERAFRLWINSLGNSTYINNVFEDVRNGWVLLETLEKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRYHSHGKEINDADILQWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDEEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAEERTAGTSDSETVSNSTVDDSSSDSSLEENGNM 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00332 659 Gene3D - 246 373 IPR036872 -
Bva01g00332 659 MobiDBLite consensus disorder prediction 631 659 - -
Bva01g00332 659 Gene3D - 389 506 IPR036872 -
Bva01g00332 659 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Bva01g00332 659 PANTHER FIMBRIN/PLASTIN 1 659 IPR039959 GO:0051015|GO:0051017
Bva01g00332 659 CDD CH 124 238 IPR001715 GO:0005515
Bva01g00332 659 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Bva01g00332 659 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Bva01g00332 659 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 659 - -
Bva01g00332 659 CDD CH 269 369 IPR001715 GO:0005515
Bva01g00332 659 Gene3D - 119 245 IPR036872 -
Bva01g00332 659 Pfam Calponin homology (CH) domain 269 369 IPR001715 GO:0005515
Bva01g00332 659 Pfam Calponin homology (CH) domain 126 238 IPR001715 GO:0005515
Bva01g00332 659 Pfam Calponin homology (CH) domain 395 498 IPR001715 GO:0005515
Bva01g00332 659 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Bva01g00332 659 Gene3D - 507 619 IPR036872 -
Bva01g00332 659 CDD CH 394 497 IPR001715 GO:0005515
Bva01g00332 659 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
Bva01g00332 659 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Bva01g00332 659 SMART ch_5 270 369 IPR001715 GO:0005515
Bva01g00332 659 SMART ch_5 516 620 IPR001715 GO:0005515
Bva01g00332 659 SMART ch_5 395 497 IPR001715 GO:0005515
Bva01g00332 659 SMART ch_5 125 238 IPR001715 GO:0005515
Bva01g00332 659 MobiDBLite consensus disorder prediction 632 659 - -
Bva01g00332 659 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00332 Bva-Chr1 2927314 2932427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00332 1 624 EF-hand Containing Proteins AT5G55400 66.454 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00332 - K17275 gmx:100799696 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00332 01 2927314 2932427 Bva02g01088 02 15116799 15124241 BWGD