Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00042 ATGGAAGATGAATATTTGGTGAGCACGTGGAACGCCTTCCCTTTCCTTCGATGGCTTTTTGGTCTTGGatgcttttctcttctcctacGCATTACTTCAATCTTCACTCAAAGTCGCCCAGAGTCCTTAATTGAGCAGCAAAGGTTTGTGGTGGAGAAGAGCAATTTGAAAGTCACTTCTCCTAAATCGTTAAAAGGTGTATATGAATGTGCAATTGGGAATTTTGGGGTACCCAAGTATGGAGGAACCATGATCGGGTCTGTTGTATACCCAAAACAGAATCAGAAGGCGTGCAAGAGCTTCGATGATGCCAGTATTTCATTTAAGTCAAGGCCCGGAAGCTTTCCCACTTTTGTTCTTGTCGATCGTGGAGATTGCTTCTTCACTTTAAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTCTTATTGTTGTTGATGACAGGagtgaaatattaattaccaTGGATACTcctgaagaagagaaaaatgacgAATATGTTGAAAAGATTAGTATTCCTTCTGCGCTTATCGGTAGATCCCTGGGGGATAGCATCAAGAAGGCTCTCTCAAGTGGGGAGATGGTTAACATAAATCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGATCGAGTTGAGTACGAGTTCTGGACAAATAGCAATGATGAGTGTGGGCCAAAGTGCGACAGTCAAATTGATTTTGTGAAGAACTTTAAAGCGTTTGTATTGAGCAAACAGTGCAAGTCTCAGTGCATAAACCATGGGAGGTACTGTGCTCCAGATCCTGAACAAGATTTCAGTAAAGGGTACGATGGCAAAGATGTTGTTATCCAAAACCTACGCCAAGCTTGCTTCTTTAAAGTAGCTAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGCAACTGATTTTGCAATTCGTTGCCCAATGAAAGAGCAGAAGTACACCGAAGAATGTTCAGATGAAGTTATTAAATCTCTTGGCGTTGATCTAAAGAAGATCAAAGATTGTGTTGGAGATCCTCATGCAGATCAGGAAAACCCTGTTCTTAAGGCTGAACAGGATGTACAgATTGGCAAGGGCTCTCGTGGTGATGTGACTATACTGCCTACACTTGTTATAAACAACAGACAATATAGAGGTAAGTTGGAAAAAGGAGCAGTTCTCAAGGCAATCTGTGCGGGTTTCCAAGAGACCACCGAGCCATCAATTTGTTTAACTCCAGATATAGAAACAAATGagtgttttgaaaataatggtGGCTGTTGGCAGGACAAGTCTGCTAACATAACTGCATGCAGGGACACTTTCCGAGGAAGAGTGTGTGAATGCCCTATTGTCCAAAATGTGAAATTTGTTGGTGATGGATACACACACTGTGAAgCTTCAGGAGCATTGCGGTGTGAAATCAACAATGGAGGCTGTTGGAAAGGTAGCCGAGGTGGTAGGGCTTACTCTGCATGTATTGACGACCATACAAAAGGATGCACGTGTCCACCTGGATTCCGGGGTGATGGAGTCAAGTCCTGTGAAGATGTAGATGAATGCAAAGAGAAATTGGCCTGCCAATGCCCAGAGTGCAAATGTAAAGATACATGGGGAAGCTACGAATGCAGCTGCAGTGGCGGTTTGTTGTACATGCATGAAAATGACACGTGTATTGGTAAATATAGTAGCACTGGAATGGTGAGCGGGTTTTGGATGGTTATTTTCATCttggctgctgctgctgctgggGGATATGCATTTTACAAGTACAGAATCCAGAGCTATATGGATTCTGAGATAAGGGCAATTATGGCTCAGTACATGCCCTTGGACAATCAACCAGAAGTCCCTCATCATGGGCATCAAGATATCTA 1868 0.4111 MEDEYLVSTWNAFPFLRWLFGLGCFSLLLRITSIFTQSRPESLIEQQRFVVEKSNLKVTSPKSLKGVYECAIGNFGVPKYGGTMIGSVVYPKQNQKACKSFDDASISFKSRPGSFPTFVLVDRGDCFFTLKAWNAQNGGAAALIVVDDRSEILITMDTPEEEKNDEYVEKISIPSALIGRSLGDSIKKALSSGEMVNINLDWREALPHPDDRVEYEFWTNSNDECGPKCDSQIDFVKNFKAFVLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVIQNLRQACFFKVANESGKPWQWWDYATDFAIRCPMKEQKYTEECSDEVIKSLGVDLKKIKDCVGDPHADQENPVLKAEQDVQIGKGSRGDVTILPTLVINNRQYRGKLEKGAVLKAICAGFQETTEPSICLTPDIETNECFENNGGCWQDKSANITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGALRCEINNGGCWKGSRGGRAYSACIDDHTKGCTCPPGFRGDGVKSCEDVDECKEKLACQCPECKCKDTWGSYECSCSGGLLYMHENDTCIGKYSSTGMVSGFWMVIFILAAAAAGGYAFYKYRIQSYMDSEIRAIMAQYMPLDNQPEVPHHGHQDI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00042 622 CDD PA_VSR 74 200 - -
Bva01g00042 622 Gene3D Laminin 408 453 - -
Bva01g00042 622 Pfam PA domain 86 186 IPR003137 -
Bva01g00042 622 ProSitePatterns Calcium-binding EGF-like domain signature. 514 540 IPR018097 GO:0005509
Bva01g00042 622 Gene3D - 46 209 - -
Bva01g00042 622 CDD EGF_CA 514 545 - -
Bva01g00042 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 47 240 - -
Bva01g00042 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 241 602 - -
Bva01g00042 622 Gene3D Laminin 469 556 - -
Bva01g00042 622 Pfam Complement Clr-like EGF-like 498 517 IPR026823 -
Bva01g00042 622 PANTHER VACUOLAR-SORTING RECEPTOR 1 47 240 - -
Bva01g00042 622 PANTHER VACUOLAR-SORTING RECEPTOR 1 241 602 - -
Bva01g00042 622 SUPERFAMILY PA domain 118 196 IPR046450 -
Bva01g00042 622 SMART egfca_6 514 556 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00042 Bva-Chr1 318729 327643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00042 48 622 Miscellaneous Gene Families AT3G52850 72.020 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00042 - - gmx:100807514 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00042 01 318729 327643 Bva02g00510 02 6433717 6440197 BWGD