Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0696 ATGCCTCAGAAATCCATCGAAATTGATTTCTTAGTCGTTGATATTGTTGCTATTTTCATCTCTTTGGCTTTGGGGATGAGGAATGGTGACCAGAAACAACAGCAAGGAGGCGGTGCTCGATCGGGTCGAACCAACGGGTTCTTCCCCAGCTCATTTCGTGCTATCTCCAGCTACCTCAGGGTGGTTTCCTCCGGTGCTTCCAACGTTGCACGGTCGGCAGCATCGGTTGCGTCCTCGATTGTGGATAGGGATGATGACGCCAATTCTGATCAGGTTATCTGGGCTGGGTTTGACAAGTTAGAGGGTGAGGGAGAAGTCATCCATCAAGTTCTACTTCTAGGATTTCGGTCTGGCTTCCAGGTTTGGAATGTTGAAGATTCAAATAACGTACATGACCTAGTTTCCAGACATGATGGTCCTGTTTCCTTTATGCAAATGCTACCAAATCCAATTGCATCAAAGAGATCAGCAGACAAGTTTGCAGATAGCCGCCCACTGTTGGTTGTCTGTGCTGATGGTTTCTTTTCTGGAGTAAGTAATACTCAGGATGGATTGGCCGCCCCTTGCACTGGGAGCACCTCAAATTGCCATGAGCAAGTGAATGGGAATTATCTGCCCACTACTGTTCAATTTTATTCTTTGAGATCCCAATCATATGTTCATGTACTAAAGTTTAGATCAGTTGTTTATACTGTAAGGTGCAGTCCTCGAGTAGTTGCTGTTTCTCAATCAACTCAGATACACTGTTTTGATGCCACAACATTAGAAAGGGAATACACTATAGTAACCAGTCCTATAGTTGTAAGTTGTCCTGGTTCTGGAAGCATGGGCTATGGACCACTTGCGGTAGGTCCAAGATGGCTGGCTTATAGTGGAAGTCCAGTTGCAATATCCAATTCTGGGCATGTTAATCCGCAACATTTGACATATTCTGCAAGCTTTCCTAGTTTTCCTTCAAATGGGAGTTTGGTTGGACACTATGCCAAAGAATCAAGCAAGCAACTTGCTTCTGGGATTGTGTCCCTTGGAGATATGGGGTATAAGAAACTTTCCAGATACTTGTCTGATAACAATAGTTCTTTGCGATCTGTGAATTCTGGTTGGAGGGGCAATGGAACCATCAATGGACATTCAGCAGATGATGACAACATTGGAATGGTCATTGTAAGAGATATTGTCAGTAAAAATGTTGTTGCGCAATTGAGGGCCCACAAAAGTCCTATTTCAGCATTATGCTTTGATCCTAGTGGCACTATTTTAGTGACTGCTTCAGTTCAGGGGCATAATATAAATGTTTTTAAGATAATGCCTGGACACTCATCTGATACTGGACCTTCTAATGTCCATCTCTACAGGTTGCAACGTGGCTTTACCAATGCAGTCATACAGGATATTAGTTTCAGTGACGACAGCAATTGGATTATGATAAGTTCCTCAAGGGGCACTAGCCATCTGTTTGCTATAAATCCTCAGGGAGGATCTGTGAATACTCAGGCCCATGATTCTAGTTTTTCTGCACAAAATAGTGGATTGGGTATTACTAATCAAGCAGTTCTTTATCCTCATAGTTCAGCCTTGCAAATTCATAAACAGCAGAGCCTGTGTGCAACTGGCCCGCCAATCACACTTTCTGTAGTAAGCAGAATTAGAAATGGAACTAATGGCTGGAGAGGCACTGTAAGTGGTGCTGCTGCAGCTGCAACAGGGAGGATGAGTTCTCTTTCTGGTGCTATTGCTTCAGCTTTCCGGAGCTGCAAAGGCAGTGCCTTAACTGTTGATGGGAAGAATTCCAAGACAAAGTATCACCTTTTGGTTTTTTCATCCTCTGGTTCTATGATACAATATGCTCTACGGATGTTAAATGGTCAAGAATCAGCAGTTATTTCTGGATTAACCCCGGGTTATGAATTAGCTCTACAAGCTGATGCATTAGTAGTGGATGCTGTCCAGAAATGGAATATTTGTCAGAGACTTAGTCTAAGAGAGCAAGATAACATTGACATATATGGTGATAATGGAGTTTCAGATGGCAATAAAATATACCCAGAAGAATTGAAAGAGGATAAAATCACTAGCCCAAAATTCAAGAATGAAGTTGCAAAAGCTAATTCCTGTTCTGAGGAAGAGCGTCATTTCTATATTTCCCAAGCTGAACTGCAGATGCATCAAACTAAGACTCCATTGTGGGTAAAGCCTGAGATATATTTTCATTCAATGGTGAAAGAAGCTACCGAAATGGATGAAGAAGTTGCTGCAGGAGGAGAACTTGAGATAGAAAGAATTCCAACTCGCATGATTCAAGCTAGGTCAAAACACTTAGTTCCTGTTTCTGATTATCTTCAGACCCCAAAATTTCAACAAACAAGGACTTCTTCTCTGGATAGCAAGATAAATGACCAATTGTTGCATCAGAGTACTGGGATATCTTTAAATGGCAGGATTTCAGCCAGGAATATTTTGGGCTCTTCTGATTGCTTGACAAATTCTAGTGGTGCTGTTGCTGAATTTAACAATGGATTTCAAGGAACTGAGTGGGATGATCGTCTGATAACAGAAGAGAGAACTTAA 2568 0.4206 MPQKSIEIDFLVVDIVAIFISLALGMRNGDQKQQQGGGARSGRTNGFFPSSFRAISSYLRVVSSGASNVARSAASVASSIVDRDDDANSDQVIWAGFDKLEGEGEVIHQVLLLGFRSGFQVWNVEDSNNVHDLVSRHDGPVSFMQMLPNPIASKRSADKFADSRPLLVVCADGFFSGVSNTQDGLAAPCTGSTSNCHEQVNGNYLPTTVQFYSLRSQSYVHVLKFRSVVYTVRCSPRVVAVSQSTQIHCFDATTLEREYTIVTSPIVVSCPGSGSMGYGPLAVGPRWLAYSGSPVAISNSGHVNPQHLTYSASFPSFPSNGSLVGHYAKESSKQLASGIVSLGDMGYKKLSRYLSDNNSSLRSVNSGWRGNGTINGHSADDDNIGMVIVRDIVSKNVVAQLRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGHSSDTGPSNVHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPQGGSVNTQAHDSSFSAQNSGLGITNQAVLYPHSSALQIHKQQSLCATGPPITLSVVSRIRNGTNGWRGTVSGAAAAATGRMSSLSGAIASAFRSCKGSALTVDGKNSKTKYHLLVFSSSGSMIQYALRMLNGQESAVISGLTPGYELALQADALVVDAVQKWNICQRLSLREQDNIDIYGDNGVSDGNKIYPEELKEDKITSPKFKNEVAKANSCSEEERHFYISQAELQMHQTKTPLWVKPEIYFHSMVKEATEMDEEVAAGGELEIERIPTRMIQARSKHLVPVSDYLQTPKFQQTRTSSLDSKINDQLLHQSTGISLNGRISARNILGSSDCLTNSSGAVAEFNNGFQGTEWDDRLITEERT 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0696 855 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 39 802 IPR045142 GO:0006914
Bisa12g0696 855 SMART WD40_4 446 487 IPR001680 GO:0005515
Bisa12g0696 855 SMART WD40_4 394 434 IPR001680 GO:0005515
Bisa12g0696 855 SMART WD40_4 216 251 IPR001680 GO:0005515
Bisa12g0696 855 Gene3D - 374 616 IPR015943 GO:0005515
Bisa12g0696 855 Pfam Breast carcinoma amplified sequence 3 538 775 IPR022175 -
Bisa12g0696 855 SUPERFAMILY WD40 repeat-like 110 489 IPR036322 GO:0005515
Bisa12g0696 855 Gene3D - 106 271 IPR015943 GO:0005515
Bisa12g0696 855 Pfam WD domain, G-beta repeat 398 427 IPR001680 GO:0005515
Bisa12g0696 855 FunFam Breast carcinoma-amplified sequence 3 317 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0696 Bisa-ChrBisa12 11014184 11020374 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0696 12 11014184 11020374 Bisa02g3118 02 79050121 79059608 CCT
Bisa12g0696 12 11014184 11020374 Bisa12g0696 12 11014184 11020374 ECH