Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0600 ATGGATCGGCTGCTAAAAGCTGCAAGAGCCTCTGGTTCCCTCAACCTCTCTAATCGCTCGCTCAGGGAAGTTCCCACTGAGGTGTACCAGAATCTGGATGGAGTTGGGGGGGATGATAAATGGTGGGAGGCTGTGGAGCTCCAAAAGCTCATTTTGGCTCATAATGATATTGAATTATTAAAGGAAGACCTTAGAAACTTACCTTTACTAACTGTGTTGAATATTAGCCACAACAGACTCTCTGAGCTTCCGACTGCAATAGGAGAGCTAACCCAGCTAAAGTTGTTAGATGTGTCATTCAATTTGATACATAAGATACCAGAGGAAATTGGATCAGCGGCATCACTTGTTAAGTTTGATTTCTCAAACAATCAACTCAAGGAGCTTCCAAGTTCACTTGGTCTATGTATAGAATTGTCAGAATTGAAGGGATCAAATAACCTAATTGCCAACTTGCCAGATAATTTAGCAAATTGCTCAAAACTGACAAAGCTGGACATGGAGGGAAACAAGCTAACTGTGATACCAGAAAATCTCATTTCTTCATGGACCATGCTTACAGAATTAAATGCCTCAAAAAATTTGCTGAATGACATACCAGTCAGCATTGGAGCCCTCTCTCGTCTAATTCGTCTTGACCTCAATCAGAACAGAATCTCATCAATCCCATCATCAATCATGGGTTGTCATTCACTCATGGAGTTATATTTGGGGAATAACACCCTTTCTACGGTACCAGTGGAGATAGGGACCCTCTCTCGTCTAGGGACCTTAGTTCTTCACTCTAACAAGCTGAAGGAGTATCCAGTAGAGGCATGTAAATTAGTTCTTTCAGTCTTAGATCTTTCAAACAATTCATTGAGTGGGTTACCCCCTGAATTAGGCAAGATGACTACCCTGAGGAAACTTCTGCTTACGGGCAATCCTCTGCGGACTCTTCGAAGCTCATTAGTCTGTGGACCTACACCGGCACTACTGAAATTTCTTCGAAGTAGACTTTCTGAAGGTGAAGGTTCTGGATCTACAGTCACCACAAAAGAGGAGATAATTTCAAAGGCTACCAGGTTGTCTATCACTTCAAAGGAACTTTCTTTGGAAGGGCTGGGGTTGAGTGCTGTTCCATCAGAAGTATGGGAATCAGGGGAGGTTGTAAAAGTTGATCTTTCAAAAAATTCCATTGAGGAGTTGCCAGTTGAGCTTTCTTCTTGTACCTCCCTCCAGACAATGATTTTATCTAGGAATAAAATTAAAGACTGGCCAGGTTCAATTCTTAAATCACTTTCAAGTCTTTCTTTTTTGAAGCTGGACAACAATCCCCTCAAACAGATTCCTTCAGATGGTTTTGAAGCTGTGCCTATGCTTCAGATTCTTGATCTAAGTGGTAATCCAACTTCTCTGCTGGGTGGCCCTGCATTTTCTAGAATGCCACATCTGCAAGAGCTTTACCTGAGAAGAATGCAGCTCAGTGAAGTCCCATCAGATTTATTGAGACTGCTTCAACTGCGAATCCTTGACTTGAGTCAAAATTCAATTCAATCTGTCCCAGTGGGTTTCAAAGACCTGACCTCTCTCACAGAGCTTGACCTATCTAATAATAACATCTCAGCCCTTCCCCCAGAGCTGGGTCTGCTCGAACAAAGCCTTCAGTCATTGAGACTTGATGGAAATCCACTCAGAAGCATTCGGAGGCCTATCTTGGAGAAAGGAACTAAAGCTGTTCTGAAATATTTGAAGGACAAATTGCCAGAGCAATAG 1755 0.4239 MDRLLKAARASGSLNLSNRSLREVPTEVYQNLDGVGGDDKWWEAVELQKLILAHNDIELLKEDLRNLPLLTVLNISHNRLSELPTAIGELTQLKLLDVSFNLIHKIPEEIGSAASLVKFDFSNNQLKELPSSLGLCIELSELKGSNNLIANLPDNLANCSKLTKLDMEGNKLTVIPENLISSWTMLTELNASKNLLNDIPVSIGALSRLIRLDLNQNRISSIPSSIMGCHSLMELYLGNNTLSTVPVEIGTLSRLGTLVLHSNKLKEYPVEACKLVLSVLDLSNNSLSGLPPELGKMTTLRKLLLTGNPLRTLRSSLVCGPTPALLKFLRSRLSEGEGSGSTVTTKEEIISKATRLSITSKELSLEGLGLSAVPSEVWESGEVVKVDLSKNSIEELPVELSSCTSLQTMILSRNKIKDWPGSILKSLSSLSFLKLDNNPLKQIPSDGFEAVPMLQILDLSGNPTSLLGGPAFSRMPHLQELYLRRMQLSEVPSDLLRLLQLRILDLSQNSIQSVPVGFKDLTSLTELDLSNNNISALPPELGLLEQSLQSLRLDGNPLRSIRRPILEKGTKAVLKYLKDKLPEQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0600 584 Gene3D Ribonuclease Inhibitor 329 468 IPR032675 -
Bisa12g0600 584 SMART LRR_bac_2 159 178 - -
Bisa12g0600 584 SMART LRR_bac_2 186 202 - -
Bisa12g0600 584 SMART LRR_bac_2 498 517 - -
Bisa12g0600 584 SMART LRR_bac_2 427 446 - -
Bisa12g0600 584 SMART LRR_bac_2 90 109 - -
Bisa12g0600 584 SMART LRR_bac_2 521 541 - -
Bisa12g0600 584 SMART LRR_bac_2 206 225 - -
Bisa12g0600 584 SMART LRR_bac_2 67 86 - -
Bisa12g0600 584 SMART LRR_bac_2 138 155 - -
Bisa12g0600 584 SMART LRR_bac_2 229 248 - -
Bisa12g0600 584 SMART LRR_bac_2 113 132 - -
Bisa12g0600 584 ProSiteProfiles Leucine-rich repeat profile. 500 522 IPR001611 GO:0005515
Bisa12g0600 584 FunFam Leucine-rich repeat-containing protein 40 472 580 - -
Bisa12g0600 584 Pfam Leucine rich repeat 405 463 IPR001611 GO:0005515
Bisa12g0600 584 Pfam Leucine rich repeat 208 265 IPR001611 GO:0005515
Bisa12g0600 584 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Bisa12g0600 584 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Bisa12g0600 584 ProSiteProfiles Leucine-rich repeat profile. 208 229 IPR001611 GO:0005515
Bisa12g0600 584 PANTHER - 361 560 - -
Bisa12g0600 584 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Bisa12g0600 584 SUPERFAMILY RNI-like 73 545 - -
Bisa12g0600 584 SMART LRR_sd22_2 206 231 - -
Bisa12g0600 584 SMART LRR_sd22_2 521 536 - -
Bisa12g0600 584 SMART LRR_sd22_2 498 516 - -
Bisa12g0600 584 SMART LRR_sd22_2 159 181 - -
Bisa12g0600 584 SMART LRR_sd22_2 90 112 - -
Bisa12g0600 584 SUPERFAMILY L domain-like 277 316 - -
Bisa12g0600 584 PRINTS Leucine-rich repeat signature 521 534 - -
Bisa12g0600 584 PRINTS Leucine-rich repeat signature 277 290 - -
Bisa12g0600 584 SMART LRR_typ_2 546 568 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 67 88 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 521 544 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 159 182 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 90 113 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 427 450 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 230 250 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 206 229 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 498 520 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 114 136 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 252 275 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 381 403 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 297 320 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 277 296 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 404 426 IPR003591 -
Bisa12g0600 584 SMART LRR_typ_2 475 497 IPR003591 -
Bisa12g0600 584 Gene3D Ribonuclease Inhibitor 1 173 IPR032675 -
Bisa12g0600 584 Gene3D Ribonuclease Inhibitor 272 328 IPR032675 -
Bisa12g0600 584 Gene3D Ribonuclease Inhibitor 174 271 IPR032675 -
Bisa12g0600 584 Gene3D Ribonuclease Inhibitor 469 580 IPR032675 -
Bisa12g0600 584 ProSiteProfiles Leucine-rich repeat profile. 115 136 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0600 196 556 Receptor kinase-like Gene Family AT4G08850 27.346 1.68e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0600 12 8887220 8898956 Bisa12g0600 12 8887220 8898956 ECH