Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0524 ATGACGAGAAGAATATCCACAACAGCATTCTTTGTTCTTCTTCTTTTTGTACTAACAACTGAGGTTGAAGGACGCCATCTGAAACACAGAATTTCTGATAATGATTTGGTGTCAGATGGAGTTGATGATGATGTTCAACTCAACAAAACTTCTTGCATACTCCTGAGAGGCATTGAATTTGAATCTGATTCTGAGGAGAGAGAGGAAGAGTGCAAGCATATGTATGGGTTCTTACCATGTTCAAGTAACATGTTAGGGCATGCTTTTCTGATTATGGTTTATGAGTACTTGTTGTTCCAAGGAGAATCATATTTGAACGACGGAGGAGAACAGATCTTCAAGATTCTTGGCCCTGGTATTTTTGGAGCAAGTGCCTTTCATGTTCTTAGTGCCCTTCCAGAATCCTTAATTTTTCTTGTTTCTGGAGTTGTGAGCAGTAAGGAGATTGCAGAAGAGTATGCTTATACTGGAGTTGGGTTGTTGGCTGGATCATCCATCTTCCTCTTGACTCTGGTTTGGGGAACCTGTGTTGTTACTGCAGCCCTACCATTTTCAAATGATTCAGCTCTTACAACCTCCAATGCTTCTACTTCCTCACTAACAAAACTTAAAGCATTTCTTACTGGTTGTGGCATAAAGACAGATTTGGAGACCAGCTACACTGCAAGGATCATGGTTCTCTCAGTGATACCACTCATAATCATGCAAATCCCTTCTTTGTTACATTTCTCTTCTGCCTCAACATCTGTCACCTTGATCATTGCTCTCACCATTACTGTCCTTTTTCTCTTCTTCTACTTCACTTACCAGATTTTTGAACCTTGGATACAGAAAAGAAGATTGGAATATGTGAAGCATGATCGTTTACTAGTAAAACTTTTACAACATGTTAAAACGAATACCCTGAAAAGGATCCTCACCAAGCAGGGCTCTCCAAATGTAAGTGCCATAAGAAGGCTATATAGGGAAATAGATCAAGATGGAGACAGTGTTGTATCAGCTTCTGAAGTAAAAGAAATGCTGCTTAAAAGTAAATCATCAAATGAAAAGAATATCAATGAGAAAGAAATAGAAGAACTACTAAGAATTTTCAAAGTGAATGGTGATGACAATAGGATAACCAAGGATGAATTTGTTAGTGGCTTCATAAAATGGCTTGAGCAAACCAAGCTTGCTCTGAACAAACAGTATATGTCAAGGAAATCACTCAAGGAGATATATCAGGTTTTTCAGCCATGGATTCAAAACAAAAGGGAAGAACAGGAAATAAAGAAACTTCTTATATCCGAAATCTTAAGGCATGTCCAGAGTGGTAAGGTTGGAAGTCTTCTCACTGAAGATGGCACACCTGATGAGTTTGCTATCAGAAGGTTGTTCGAACAGATTGACAGCGACAGAGATAACTGCATTTCCCCCTCTGAGTTAAGAGAACTACTGAAGAACATCAATTCTGTTAAGGCATCAATGGATGTGGAGGAAGCAGTTAGTAAAGTCATTGAAGAACTTGACCTTAACAGTGACCACGTTATCAGTGAGGAGGAATTTGTTTCTGGGTTTCAAAATTGGCTTAGCTCATCTTCCTCCAGTCCTGCCCTTCTCTCAGATTTCAAGAGTGAAGAAGATATATTTCAAATGTGGGAAGACGCTGAAATGGTGATGGAAGAGAAGGAGAGCAAAGCATTAGTTGATAAACCAATATGGGCATGGTCCAAGGCTATAGTATATGTGCTTGTGGGAATTGCTATCTTATCTGTTCTTGCAGAGCCCCTAACAGAAAGTGTCCAAAAGTTCTCAAACAGTGCAGGAGTCAATGCATTCTTCATCTCATTTATTTTAGTCCCACTGGCTACAAATGCTAGAGAAGCAACTTCTGCAATCAAAGAATCAAGCCATAAGAAGCCAAGAACTACTTCTCTTACCTTTTCTGAGATTTATGGAGGAGTGTTCATGAACAATGTTCTGGGCTTCTTTGCAATTTCAGTTTTGATATATGTGAGAGAAATGACCTGGCAATTCTCAGCTGAAGTACTGGTTGTGGCAATTGTCTGTGCTGCAATGGGCGTTACTGCTGGCTTTCGCTCCACTTTCCCCTTATGGTCATCCTTTTGTGCATACCTCTTGTACCCACTATCTCTAGTCTTGGTTTTCTATCTCAACAATGTTCTCAATTACGTTTAA 2178 0.3953 MTRRISTTAFFVLLLFVLTTEVEGRHLKHRISDNDLVSDGVDDDVQLNKTSCILLRGIEFESDSEEREEECKHMYGFLPCSSNMLGHAFLIMVYEYLLFQGESYLNDGGEQIFKILGPGIFGASAFHVLSALPESLIFLVSGVVSSKEIAEEYAYTGVGLLAGSSIFLLTLVWGTCVVTAALPFSNDSALTTSNASTSSLTKLKAFLTGCGIKTDLETSYTARIMVLSVIPLIIMQIPSLLHFSSASTSVTLIIALTITVLFLFFYFTYQIFEPWIQKRRLEYVKHDRLLVKLLQHVKTNTLKRILTKQGSPNVSAIRRLYREIDQDGDSVVSASEVKEMLLKSKSSNEKNINEKEIEELLRIFKVNGDDNRITKDEFVSGFIKWLEQTKLALNKQYMSRKSLKEIYQVFQPWIQNKREEQEIKKLLISEILRHVQSGKVGSLLTEDGTPDEFAIRRLFEQIDSDRDNCISPSELRELLKNINSVKASMDVEEAVSKVIEELDLNSDHVISEEEFVSGFQNWLSSSSSSPALLSDFKSEEDIFQMWEDAEMVMEEKESKALVDKPIWAWSKAIVYVLVGIAILSVLAEPLTESVQKFSNSAGVNAFFISFILVPLATNAREATSAIKESSHKKPRTTSLTFSEIYGGVFMNNVLGFFAISVLIYVREMTWQFSAEVLVVAIVCAAMGVTAGFRSTFPLWSSFCAYLLYPLSLVLVFYLNNVLNYV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0524 725 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Bisa12g0524 725 CDD EFh 455 520 IPR002048 GO:0005509
Bisa12g0524 725 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Bisa12g0524 725 Gene3D - 269 387 - -
Bisa12g0524 725 Gene3D - 388 532 - -
Bisa12g0524 725 SUPERFAMILY EF-hand 315 523 IPR011992 -
Bisa12g0524 725 ProSiteProfiles EF-hand calcium-binding domain profile. 312 347 IPR002048 GO:0005509
Bisa12g0524 725 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 74 719 IPR004713 GO:0006812|GO:0008324|GO:0016020
Bisa12g0524 725 Pfam Sodium/calcium exchanger protein 572 716 IPR004837 GO:0016020|GO:0055085
Bisa12g0524 725 ProSiteProfiles EF-hand calcium-binding domain profile. 490 525 IPR002048 GO:0005509
Bisa12g0524 725 ProSitePatterns EF-hand calcium-binding domain. 503 515 IPR018247 -
Bisa12g0524 725 SMART efh_1 316 344 IPR002048 GO:0005509
Bisa12g0524 725 SMART efh_1 356 385 IPR002048 GO:0005509
Bisa12g0524 725 SMART efh_1 494 522 IPR002048 GO:0005509
Bisa12g0524 725 SMART efh_1 454 482 IPR002048 GO:0005509
Bisa12g0524 725 Pfam EF-hand domain pair 454 519 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0524 Bisa-ChrBisa12 7851352 7858807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0524 406 719 EF-hand Containing Proteins AT1G53210 43.692 2.95e-74 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0524 12 7851352 7858807 Bisa12g0524 12 7851352 7858807 ECH