Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0523 ATGACTCTCCCTACCCCTTTCACCCTTTTCCTTGCAATCCTACTCCTCTGCGGTCACACCCATGGTCGCTTGGTCACTCACCTTTCTTCTTCGACCTCCTCCTCTGATCTGATCTCTGATGGGGTCCATTATTCCCAGCAGGTCCCAAAGCAGAACACCCCGCTCCTTCTTCCCCAGGCATTCGGGTTCCTGGGAGAGTCTACCTGCGAGCAGACGTATGGGTTCTTACCCTGCACAACCACTGTGATTGGAAACCTGTTCATGATCATTATCTATGGTTTCCTCATGTACAAGGCTGCAACTTACTTGTCCAGTGGGAGTGAGCTCTTGCTTGAGATCTTAGGCCCTGGTATAGTTGGTGGGTTGTTTCTTCCCATGCTTGGTGCTCTTCCAGATGCTATGCTTATTCTCGTATCTGGGCTTTCTGGTAGTAAAGAAACTGCTCAAGATCAGGTCTATGTTGGAATGGGCTTGCTAGCTGGGTCAACAGTTCTGCTTCTGACTATAATATGGGGATCCTGCGTTATTGTTGGCAAGTGCGATATTGTGGACTCAATTGCAATAGATTCACAAGACACAAGGGAGTTTAGCTTAACTGGATCTGGTGTTAGTACAGATATTTGGACTAGTTATGCAGCAAGGATTATGGTCATATCTGTCCTTCCATTTCTGATTGTTCAGTTGCCACAAATTCTTAATTCAACTTCTGGAAGGCACTTGGCTGTTTTGATTGCACTTATTGTCTCTCTCGCTTTGTTGATTTGTTATTGCCTTTACCAGATTTTCCAGCCTTGGATACAGAGGAGAAAACTTGCTTATGTGAAGCACAAGCATGTCATTTTGGGCCTTTTGAGACACTTAAAGGAGCGTGCATTGGGAAGGTTGCTGAGACATGACGGTGAACCCAACGAAGAAGTTATAAGAAAGCTGTTTGCTGCAATTGACGAGAACAATGATAGACGCCTTTCTCATGGTGAACTGAGAGCACTAATTGTTGGAATTGAATTTGAGGAGATTGACTTGGATCACGATGATGCTGTGAAACAAATAATGCAAGATTTTGATACTTCTCGTGATTCACTTGTTGATGTAGATGAATTTGTACTTGGTATCTCTAGATGGCTTCAAAGGGCTAAGCGTTCTCAAGCTGGTTCTGGTGATGCCGGTCCACACACAACGAAGTTTTTAAGTGATTTTCACCTAGAAACAAAAAGGGAACATGATCTATTGGATGTGGGGGATCATGGCAATGAAGCTACTGAGGGTGTTGCTAATGCCAAATGGAATGTTGTCAAAGCAGTGTTGCTGCTGCTGCTTGGAACTGTTATTGCAGCTGTGTTTGCTGATCCTCTGGTTGATGCAGTTGATAACTTTTCTGACGCCACGAGCATTCCTGCTTTCTTCATTTCCTTCATTGCGCTGCCTTTGGCTACAAATTCAAGTGAAGCAGTGTCAGCGATCATTTTTGCTAGTCGTGATAAGAGGCAAACCGCTTCATTAACTTTCTCTGAGCTATATGGAGCAGTGACAATGAACAACGTGTTGTGCCTGTCAGTGTTCTTGGCCCTTGTATATGCCCGAGGACTGACGTGGGACTTCTCGTCGGAAGTGTTGGTAATCCTCATAGTCTGCATCATCATGGGTCTGTTTGGCAGTTTCCGTACTACCTTCCCTCTCTGGACATCTCTGGTGGCTATCCTACTTTACCCCTTGTCTCTGGCATTGGTCTATGTTCTTGATTATGTGTTTGGCTGGTCCTAG 1761 0.4503 MTLPTPFTLFLAILLLCGHTHGRLVTHLSSSTSSSDLISDGVHYSQQVPKQNTPLLLPQAFGFLGESTCEQTYGFLPCTTTVIGNLFMIIIYGFLMYKAATYLSSGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGLSGSKETAQDQVYVGMGLLAGSTVLLLTIIWGSCVIVGKCDIVDSIAIDSQDTREFSLTGSGVSTDIWTSYAARIMVISVLPFLIVQLPQILNSTSGRHLAVLIALIVSLALLICYCLYQIFQPWIQRRKLAYVKHKHVILGLLRHLKERALGRLLRHDGEPNEEVIRKLFAAIDENNDRRLSHGELRALIVGIEFEEIDLDHDDAVKQIMQDFDTSRDSLVDVDEFVLGISRWLQRAKRSQAGSGDAGPHTTKFLSDFHLETKREHDLLDVGDHGNEATEGVANAKWNVVKAVLLLLLGTVIAAVFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVILIVCIIMGLFGSFRTTFPLWTSLVAILLYPLSLALVYVLDYVFGWS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0523 586 ProSiteProfiles EF-hand calcium-binding domain profile. 302 337 IPR002048 GO:0005509
Bisa12g0523 586 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 578 IPR004713 GO:0006812|GO:0008324|GO:0016020
Bisa12g0523 586 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 279 401 - -
Bisa12g0523 586 Pfam Sodium/calcium exchanger protein 433 577 IPR004837 GO:0016020|GO:0055085
Bisa12g0523 586 Pfam Sodium/calcium exchanger protein 87 262 IPR004837 GO:0016020|GO:0055085
Bisa12g0523 586 SMART efh_1 346 374 IPR002048 GO:0005509
Bisa12g0523 586 SMART efh_1 306 334 IPR002048 GO:0005509
Bisa12g0523 586 ProSiteProfiles EF-hand calcium-binding domain profile. 342 377 IPR002048 GO:0005509
Bisa12g0523 586 FunFam Sodium/calcium exchanger NCL2 422 579 - -
Bisa12g0523 586 CDD EFh 307 372 IPR002048 GO:0005509
Bisa12g0523 586 ProSitePatterns EF-hand calcium-binding domain. 315 327 IPR018247 -
Bisa12g0523 586 Gene3D - 254 385 - -
Bisa12g0523 586 Pfam EF-hand domain pair 304 368 IPR002048 GO:0005509
Bisa12g0523 586 SUPERFAMILY EF-hand 300 375 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0523 Bisa-ChrBisa12 7837913 7843834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0523 28 586 EF-hand Containing Proteins AT1G53210 67.082 0.0 741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0523 12 7837913 7843834 Bisa12g0523 12 7837913 7843834 ECH