Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0484 ATGAGAATCCATTGCTTCCCCTGTTGGCCACCACCCTCTCTTTTTTCTGAATCTGAATCTGAAACCCAACCTACCTCTCTTTCATCCCTGATCTCGAAGACGCGCTTTCATCTTCGTATTGATGTAATTCTTAGTAAGATGGGAGGTGGGTTTAGAGTGCTTCACCTAGTTAGACCATTTCTGTCATTTCTGCCTGAAGTTCAGACTGCTGACAGGAAAATTCCATTTAGGGAGAAGGTCATATATACTGTGATCTCTCTGTTCATTTTCCTGGTTTGTAGTCAGCTCCCTCTGTATGGAATACACTCAACAACTGGTGCAGATCCTTTCTATTGGATGAGGGTTATACTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGTATCACCCCCATTGTGACTTCTGGATTGGTGATGCAACTTCTTGCTGGTTCAAAAATCATTGAAGTGGACAACAATGTACGCGAGGATCGTGCTCTCCTAAATGGAGCACAGAAGCTTCTTGGCATCTTGATAGCTGTTGGAGAGGCAGTTGCCTATGTTCTTTCTGGGATGTATGGTAGTGTGGGCCAACTTGGAGTAGGGAATGCCATCCTCATCATCGTTCAGCTCTGCTTTGCTGGTATCATTGTGATATGTTTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCCGGAATTTCCCTATTCATTGCAACTAATATCTGTGAAAATATCATATGGAAGGCATTTAGCCCCACCACCATTAACAGTGGACGGGGTGCTGAATTTGAGGGTGCTGTTATTGCTCTATTCCATTTGTTGATAACTAGAACAGACAAGGTCCGTGCCCTACGCGAGGCATTTTACAGGCAGAATCTTCCCAATGTGACAAATCTTCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGCTTCCGTGTGGTTTTGCCCGTAAGATCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCTATTAAACTATTTTATACCTCTAACATGCCCATTATTCTTCAGTCCGCCCTTGTTTCCAATCTCTACTTCATCTCTCAGCTTCTTCACCGGAAATACAGTGGAAATTTCTTTGTAAATTTGTTGGGCATATGGAAGGAGACTGAATATGGAGGTGGTCAATCTATTCCTGTTGGTGGTATTGCATACTACATCACAGCACCATCTAGCTTAGCCGATATGGCAGCCAATCCTTTCCATGCGCTGTTCTATCTTGTGTTCATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGATCATCTGCTAAAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTGATGCCCGGGCACCGTGAGTCAAACTTGCAGAAAGAGCTTAACCGATACATTCCCACTGCTGCAGCATTTGGAGGCATGTGTATCGGTGCTCTGACCGTGTTGGCTGACTTCATGGGGGCAATTGGGTCAGGGACAGGGATACTACTGGCAGTGACAATTATCTATCAGTACTTCGAGACATTTGAGAAGGAGAGAGCTAGTGAGCTTGGCTTCTTTGGTTTCTAA 1569 0.4436 MRIHCFPCWPPPSLFSESESETQPTSLSSLISKTRFHLRIDVILSKMGGGFRVLHLVRPFLSFLPEVQTADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGIWKETEYGGGQSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0484 522 PIRSF SecY_Sec61alpha 54 517 IPR002208 GO:0015031|GO:0016020
Bisa12g0484 522 NCBIfam preprotein translocase subunit SecY 77 513 IPR002208 GO:0015031|GO:0016020
Bisa12g0484 522 ProSitePatterns Protein secY signature 1. 123 142 IPR030659 -
Bisa12g0484 522 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 64 516 IPR002208 GO:0015031|GO:0016020
Bisa12g0484 522 FunFam Transport Sec61 subunit alpha isoform 2 55 520 - -
Bisa12g0484 522 Pfam SecY 123 505 IPR002208 GO:0015031|GO:0016020
Bisa12g0484 522 SUPERFAMILY Preprotein translocase SecY subunit 56 512 IPR023201 -
Bisa12g0484 522 Gene3D SecY subunit domain 55 520 IPR023201 -
Bisa12g0484 522 Pfam Plug domain of Sec61p 88 122 IPR019561 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0484 Bisa-ChrBisa12 7330353 7335214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0484 47 522 Miscellaneous Gene Families AT2G34250 93.067 0.0 905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0484 12 7330353 7335214 Bisa12g0484 12 7330353 7335214 ECH