Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0426 ATGTCAATTTATATTCACCATAAAAGCACAATACTGCATTCAAGTCTGTACCAATTTAATTTTCTTGTCATGGCTACATATACCCCAAAGAATATCCTCATCACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGGCTTATCCGAAACTACTCTGACTACAAAATTGTTGTGCTTGACAAACTTGATTACTGTTCTAATCTGAAGAATCTCTTTCCTTTAAAATCATCTCCGAACTTCAAGTTCGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATTGCTGAATCTATCGACACAATAATGCACTTTGCTGCTCAGACCCATGTTGACAACTCGTTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTGCTAGAAGCCTGCAAGGTCACTGGCCAGATCAGGAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACAGATGAGGATGCTGTTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCTACAAATCCATACTCTGCAACAAAAGCAGGAGCAGAAATGCTTGTAATGGCATATGGTAGGTCATATGGGTTACCTGTGATCACCACACGTGGAAACAACGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCTATGCAAGGCAAGCCCCTTCCAATTCATGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGCCATGTTTACAATATTGGGACTACGAAAGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCTCAATGGACCCGGACACTAGTATAAAGTTTGTCGAGAATAGACCATTTAATGACCAGAGATACTTTCTTAATGATCAAAAGCTGAAGATCTTGGGTTGGTCTGAGAGGACCACCTGGGAAGAAGGGCTGAAAAAAACCATCGAGTGGTATACTAAGAATCCTGATTGGTGGGGTGATGTCAGTGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCAGGTGGGATGGAGAGACATTTTGAAGGCTCTGACGAGGAAGAACATGCATCCTATGTCTCAACCAATACTCGAATGGTGGTTCCATCATCTAAGAACACTGTTGCTCAGCAGAAACATGCTTATAAGTTCTTGATCTATGGTAGAACGGGGTGGATTGGGGGTCTGTTAGGGAAACTCTGTGAAAAACAAGGGATTCCATTTGAATATGGCAAAGGGCGCTTAGAGGATCGTTCTTCGCTTGTGGCAGATATCCACAGTGTGAAGCCTACACATGTTTTCAATGCTGCCGGAGTGACTGGAAGACCCAATGTTGACTGGTGTGAATCTCATAAAACAGAAACCATTCGCACTAATGTTGCTGGTACTTTAACATTGGCCGATGTCTGCAGAGAGCAGGGGCTCTTGATGATAAATTACGCCACCGGGTGTATATTTGAGTATGATGCAGCACATCCAGAGGGTTCTGGCATTGGTTTTAAGGAGGAAGACAAACCCAACTTTATTGGTTCTTTCTATTCCAAAACTAAAACTATGGTTGAAGATCTTCTGAAAGATTATGATAATGTGTGCACCCTTAGGGTTCGCATGCCAATTTCATCTGATCTGAATAATCCACGCAACTTCATCACAAAGATTACTCGTTATAACAAAGTGGTCAACATTCCAAACAGTATGACTATCTTGGATGAACTTTTGCCAATTTCAATTGAAATGGCAGAGCGAAACCTACGTGGCATATGGAACTTCACAAATCCTGGGGCTGTGAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGATCCCAACTTCAAGTGGGTTAACTTTACACTCGAAGAGCAAGCCAAGGTGATAATTGCTCCAAGAAGCAACAATGAGATGGATGCATCCAAGTTGAAAACAGAGTTCCCAGAGTTGCTTCCCATCAAGGAATCACTGATCAAGTACGTCTTTGAACAAAACAGGAAGACGGCTAAAAAATAA 2085 0.423 MSIYIHHKSTILHSSLYQFNFLVMATYTPKNILITGAAGFIASHVANRLIRNYSDYKIVVLDKLDYCSNLKNLFPLKSSPNFKFVKGDIGSADLVNYLLIAESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTTKERRVIDVAKDICRLFSMDPDTSIKFVENRPFNDQRYFLNDQKLKILGWSERTTWEEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHFEGSDEEEHASYVSTNTRMVVPSSKNTVAQQKHAYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLEDRSSLVADIHSVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREQGLLMINYATGCIFEYDAAHPEGSGIGFKEEDKPNFIGSFYSKTKTMVEDLLKDYDNVCTLRVRMPISSDLNNPRNFITKITRYNKVVNIPNSMTILDELLPISIEMAERNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIIAPRSNNEMDASKLKTEFPELLPIKESLIKYVFEQNRKTAKK 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0426 694 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 355 IPR036291 -
Bisa12g0426 694 FunFam UDP-glucose 4,6-dehydratase 32 232 - -
Bisa12g0426 694 Gene3D - 32 336 - -
Bisa12g0426 694 CDD dTDP_HR_like_SDR_e 408 680 - -
Bisa12g0426 694 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 398 694 - -
Bisa12g0426 694 CDD dTDP_GD_SDR_e 30 347 IPR005888 GO:0008460|GO:0009225
Bisa12g0426 694 Gene3D - 223 345 - -
Bisa12g0426 694 Pfam RmlD substrate binding domain 408 580 IPR029903 -
Bisa12g0426 694 NCBIfam dTDP-glucose 4,6-dehydratase 31 351 IPR005888 GO:0008460|GO:0009225
Bisa12g0426 694 Pfam GDP-mannose 4,6 dehydratase 33 338 IPR016040 -
Bisa12g0426 694 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 26 361 - -
Bisa12g0426 694 Gene3D - 397 694 - -
Bisa12g0426 694 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 404 683 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0426 Bisa-ChrBisa12 6026620 6030358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0426 31 342 Miscellaneous Gene Families AT4G00110 27.761 1.00e-20 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0426 12 6026620 6030358 Bisa12g0426 12 6026620 6030358 ECH