LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g2120	ATGGAGGTCCATCCGCCTGAAATCGAGCAGGCTAGGTATTCAGATTCTGTTCTTGGAGGAGTGCCCTTTGCGGATGCTTCAGTGGTTCCACCTGGAATGCCAGTTTCGGTCGGAGCTCTCACTGGGTCTTCATCATCTTCGCATTCTGAAACCCTAAATAACCGTTCTTTCGTTCCGTCTTTACCAAATCAAAAGGGTTTCTCAATGTCTTCACCTAATGAGGCCCAAGACGACCGGATTATTGCTCCTCTGCCATCTGATAGAAGTGTCTCTCCTCCGAATTCTGATTCCGAAACCCTAGGTGGCTGTTCTCTATACTCTTCACTTCCTAATTCAAACGGGTCGTCTAGTACTAGCAAAACCCTAGAGGAGTGTACACCTTCTGCATCAATCGAAACTCTAGATGGCCTGCCTCTTCCGCCTTTGGTGCCTCATTCATCAACTCTAGATGGGTCTTCACCGCCCGTGGCATCGGCTGCCGAGAATAATTATTCCCTTGCAATTTGTGAATCCGAGATTGACGCTCAAGATGAGGATCCAGAGCCAATTCGATCAGCAAACGGTTTATCATACTATTCGTCTTTGTCATCGCCCAAGCAGTGGCCTTCGTGGTCCGGGCCTTCATCGTTGCCCTCTAAAGAAGAACCCTGGAATTCTGAGCTTAATCCCGAAGAAATCTTGCTAAGTTCTGAAGATACCGGTATACCTTTGAAAAATACGTTTACTGCTTCCGGAATTGTACCTTTTACGGTGGGTGCTGGGCTTGCTAATCTCGGCAACACATGCTTCCTCAACGCTATCTTGCAATGCCTTACACATACCGCGCCACTAATTCAGGGTCTTCGTTCTTGCAGTCATTCTACTTCTTGTGAAGATGGGACATATGTTGAAAAGCTTGATCATCATGTGGAATTTCCTCTGGAGTTGGACTTGGAGCCTTACACCCGTTCTAACCAGAGCAATAATGTAGCACTGAAATATGATCTATATGCCATTGTCGTACATGTTGGGTTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTTCGCTCTGCACCTGACTTGTGGTATCAGTTGGATGATTCCAAGGTTACTAGGGTCCTAGGTGATTCTGTCCTGTCTCAGGAGGCATACATATTGCTCTATGCACGACAGGGCACACCATGGTTATCGAGTATAATGGAAACTTCAAGGCCATGCATGGTCCCAAGCATTTTGAATACATCTCCCAAGTCCGTTTTAGACAATGTTGACAGCTTGTATAACTCAAATCCTAATATAGCGAATTACGTAAGTTGTGATGCAAATGAATCCAAAGAATTTGAGAGGCAGATGTCTGATTATTCTTTTAGAGGAATGAATGAAGTTCTTGAGGCCAATGATACAGTAGATGCTTCCCACGAACCCGGACAATTTTGTTCCGAGTTAAATCAGGCTACTGTTAGTTATAATGGCTCTAGAGATGATACCATCAATGCCCAGGCGCCATGCAGTGAGATAAATGGCTCACTCTCCTCACTTGAAAACCATGTCCATCAGGAGGTTGTTGATATTAGAGAGAATGATGGTTTCCATCCTTTAACTCCCCCCAGCTCCCCAGGTTCAGATACCTTTTCTCCAGGTAAATCAGTATACTTTTCTTACAGGTCTTATTTCTTTCTTTCCATAAATCTTCTTAGTGTGTCTAACTTCCCTAAGTTGGAGCTTTTAGATACGAATTACTGCATCCCTCGTGATCATTTGAAGATAGAGAATCGTGGGAGCTGTAAGAGGCCATTAGATAAGTCTACAGATGATTCTCAGAGAAAAGAAGCTGTGAGATATCTCAGTAAGAAAGTGCATGGTTCAAGGAGATCTAAACTTCTGGGTGCTCTGACTGGTTCCCCTGGTGATGGTTCAAACAAGAAGAGAAAGAAAGTAGATTCAATACCGTATCTAGACGGTAGCAACAATGAAGACGATTGTTGTGAGGTTGTAAAAGCTTTCATTCACAGAGAGAGAGATGGAACTTTGAAGGGAACGATTGTGAGAGGGAAGTTTAGAGAATACGACAGATCATCCATCTCCTTGAGATGGAACTTTGAAGAGTGGAACTCCGATGAGAACGTTGTCTTGCTGCATACCCTGAAGGAAATAGGGTCTAACCTCTCCAACAAAGAAGATGGATTCTCTGGAGTTAGATCGGTTGGAGTAGCTACTTATTGAGCACTCACTTACTGTAAAAATATTATTTATAGTAAAATGAGAGAATTTATTTCATACAAATATAATAGTAAGTTCAGAATAATATCAGGGTATGTAATTGCTATTATCAAGCGCAGACATCTTTTCGTTACACAAATAGTTAATGGCAAGAATTGA	2361	0.4291	MEVHPPEIEQARYSDSVLGGVPFADASVVPPGMPVSVGALTGSSSSSHSETLNNRSFVPSLPNQKGFSMSSPNEAQDDRIIAPLPSDRSVSPPNSDSETLGGCSLYSSLPNSNGSSSTSKTLEECTPSASIETLDGLPLPPLVPHSSTLDGSSPPVASAAENNYSLAICESEIDAQDEDPEPIRSANGLSYYSSLSSPKQWPSWSGPSSLPSKEEPWNSELNPEEILLSSEDTGIPLKNTFTASGIVPFTVGAGLANLGNTCFLNAILQCLTHTAPLIQGLRSCSHSTSCEDGTYVEKLDHHVEFPLELDLEPYTRSNQSNNVALKYDLYAIVVHVGFSSTSGHYFCFVRSAPDLWYQLDDSKVTRVLGDSVLSQEAYILLYARQGTPWLSSIMETSRPCMVPSILNTSPKSVLDNVDSLYNSNPNIANYVSCDANESKEFERQMSDYSFRGMNEVLEANDTVDASHEPGQFCSELNQATVSYNGSRDDTINAQAPCSEINGSLSSLENHVHQEVVDIRENDGFHPLTPPSSPGSDTFSPGKSVYFSYRSYFFLSINLLSVSNFPKLELLDTNYCIPRDHLKIENRGSCKRPLDKSTDDSQRKEAVRYLSKKVHGSRRSKLLGALTGSPGDGSNKKRKKVDSIPYLDGSNNEDDCCEVVKAFIHRERDGTLKGTIVRGKFREYDRSSISLRWNFEEWNSDENVVLLHTLKEIGSNLSNKEDGFSGVRSVGVATYXALTYCKNIIYSKMREFISYKYNSKFRIISGYVIAIIKRRHLFVTQIVNGKN	786

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g2120	786	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	254	269	IPR018200	GO:0004843\|GO:0006511
	Bisa11g2120	786	Gene3D	Cysteine proteinases	293	387	-	-
	Bisa11g2120	786	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	297	385	IPR028889	-
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	88	128	-	-
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	170	189	-	-
	Bisa11g2120	786	Gene3D	Cysteine proteinases	249	292	-	-
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	620	644	-	-
	Bisa11g2120	786	Pfam	Ubiquitin carboxyl-terminal hydrolase	296	382	IPR001394	GO:0004843\|GO:0016579
	Bisa11g2120	786	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 2.	327	345	IPR018200	GO:0004843\|GO:0006511
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	22	158	-	-
	Bisa11g2120	786	SUPERFAMILY	Cysteine proteinases	293	384	IPR038765	-
	Bisa11g2120	786	SUPERFAMILY	Cysteine proteinases	248	291	IPR038765	-
	Bisa11g2120	786	Pfam	Ubiquitin carboxyl-terminal hydrolase	254	289	IPR001394	GO:0004843\|GO:0016579
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	38	75	-	-
	Bisa11g2120	786	MobiDBLite	consensus disorder prediction	203	222	-	-
	Bisa11g2120	786	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	295	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g2120	Bisa-ChrBisa11	44421944	44429666	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g2120	293	384	Miscellaneous Gene Families	AT2G24640	41.053	2.53e-14	74.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa11g2120	11	44421944	44429666	Bisa11g2120	11	44421944	44429666	ECH