Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1618 ATGCATACGAGGCCGTTCTTCTGCAAGGTTAGCGCGATTATCAGATTAACGCAACACACTCGGTCCTATGCCCGTGACCCCTTTCCCAGTAGAGTTTCTCACTACCTTTACCGTGCAAAACTCATAGACTCCATTCGACTCACTCTGCGATCCGATCGTGCCAACTCACTTCCTCGTCTTCTGAACGATCGTCTCCTCGACTCTTTCGTAGTCACTCAGGCGCTGCGTTCTGCCCCCTCATCAAGTTCTGCGCTCTCCCTTGTTGAAGCCCTTGAGAAAATTCCAGGATTTTCGCATACCCAGCATACCCTCCATGCCCTGGCCACTGTGCTTGCCAAATCACAGCGAAGTGCAGAACTCAAATCCCTCGTTAATGCTATCACTACTGGAAGATACGGCAATGTTCGCATCAGCTTTATGAACCTCCTGAAGTGGCATGCTGAGGCTGGGGATCTTGAGTCAGTTCTTGAGGTTTGGGATGAGTATAGACTCGCCAATAAGCGTGCCTGCACTGAATCATATAATGTTGTTATGGCTCTTTATGCACAAATGGGTAAGGACTCTGAGGCAGTAACGATTTTCTGCAGGATGATTGATGAAGGGGCAATTCCAAATTGCAGAACCTATACAATAATAATCGAGCACCTTGTAAGATCTGGAAAGTCATTTGCAGCCATGGAGGTCTTTAGCATACTACCTTTAATGCGGATCAAACGCACTCTGAAGCAGTACTCAATTCTGATTGAGAGTTTCATTGGTATCAGACGGCTTGATGAAGTCAAAACTCTACTCCATAAAATGCAAGTTGATGGAATATTGCCTAATCGGGCCTTGTGTTTGTCACTTCAGCAGATTCAAGAGGAAGAATTCCTTGAGGACACTGACAAGTTCTTCAAAGAAAGTTTGTCAGATGAAAGAATCAAGAACCTAGGATATTCTATTGACAGTAGTGACAATGATGAAGATGAGGATGAGGATGAGGATAAGAGTGTAAGTCATTATTGTCAAAATGAGGATGCAATCCAGTTAAAACCTTGGCTGGACCCACGGGCTTTGGCAAGTGCCTTAAAGAAATGGGGTCCTGATGAGGTATCGGCACTAGAGAGTGCAAACTTTGTGTGGACAACGAGGTTGGTCTGCAAGATGCTTAGAAATTTCAACTCACCAGAAACTGCTTGGAATTTCTTCTGCTGGGTTGCATATCAACCTGGATTTACTCATGACATATACACAGTACAAAGAGTCATGACCCTTCTAGCACGTCATGGGCGGACAGAATTGGTTGATAGGCTCATCTCCAAGATCAGAGTGGAGGGTATGAGACTGCCATTTAGCACCATAAGGCTAATAATTGACTTCTATGGAATTTCAAATAATGCTAATGCTGCTCTGAAGGTCTTCAATTCTGATCGAACACTTTGTGGGCCCATATCAAAATCTAACCTTATGCTTTTGTATTCCTCTCTTCTACGAGCATTAACCAAATGTGGAAGGAATGCTGATGCCCTGGATATACTTGATGAGATGATTATGAACGGCATTTTCCCAGATATCCAGACGTTTTCTGGTCTAATGCACCATTTTGGACACCTTGGAGACATAAAAACAGTGCAGAAGCTCTTTTCAATGGTTAGGCAGAGTGGTTTAGAGCCGGATGCTTATCTTTTCAAAGTACTAATCCAAGGTTATTGCAAGGCAGAAAGAGCTGCACTAGCATGGAGGATATTTGAAGACATGAAGAATTCAGGTTTGATGCCTGATTCTGCCACCAAAGAGTTGCTTGTGAAAAGCCTTTGGAAAGAAGGGAGAAGGAGGGAGGCTGCAGCTGTGGAAGAGAGTTGTGAGGAAATAAATGAGGTCCTTCCACTTACATTGCGTGGTCATATATGGTCCGTCAGCTCTGCAGACCTCATGAGAGTTTATAATATTTATTCAAACAGTTTTTCATTGACAGATGGCTAG 1962 0.4388 MHTRPFFCKVSAIIRLTQHTRSYARDPFPSRVSHYLYRAKLIDSIRLTLRSDRANSLPRLLNDRLLDSFVVTQALRSAPSSSSALSLVEALEKIPGFSHTQHTLHALATVLAKSQRSAELKSLVNAITTGRYGNVRISFMNLLKWHAEAGDLESVLEVWDEYRLANKRACTESYNVVMALYAQMGKDSEAVTIFCRMIDEGAIPNCRTYTIIIEHLVRSGKSFAAMEVFSILPLMRIKRTLKQYSILIESFIGIRRLDEVKTLLHKMQVDGILPNRALCLSLQQIQEEEFLEDTDKFFKESLSDERIKNLGYSIDSSDNDEDEDEDEDKSVSHYCQNEDAIQLKPWLDPRALASALKKWGPDEVSALESANFVWTTRLVCKMLRNFNSPETAWNFFCWVAYQPGFTHDIYTVQRVMTLLARHGRTELVDRLISKIRVEGMRLPFSTIRLIIDFYGISNNANAALKVFNSDRTLCGPISKSNLMLLYSSLLRALTKCGRNADALDILDEMIMNGIFPDIQTFSGLMHHFGHLGDIKTVQKLFSMVRQSGLEPDAYLFKVLIQGYCKAERAALAWRIFEDMKNSGLMPDSATKELLVKSLWKEGRRREAAAVEESCEEINEVLPLTLRGHIWSVSSADLMRVYNIYSNSFSLTDG 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1618 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Bisa11g1618 653 Gene3D Tetratricopeptide repeat domain 481 635 IPR011990 GO:0005515
Bisa11g1618 653 Pfam PPR repeat 244 272 IPR002885 -
Bisa11g1618 653 NCBIfam pentatricopeptide repeat 486 518 IPR002885 -
Bisa11g1618 653 NCBIfam pentatricopeptide repeat 173 206 IPR002885 -
Bisa11g1618 653 NCBIfam pentatricopeptide repeat 244 275 IPR002885 -
Bisa11g1618 653 NCBIfam pentatricopeptide repeat 556 587 IPR002885 -
Bisa11g1618 653 Gene3D Tetratricopeptide repeat domain 73 342 IPR011990 GO:0005515
Bisa11g1618 653 Gene3D Tetratricopeptide repeat domain 353 474 IPR011990 GO:0005515
Bisa11g1618 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Bisa11g1618 653 Pfam Pentatricopeptide repeat domain 486 529 IPR002885 -
Bisa11g1618 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Bisa11g1618 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Bisa11g1618 653 PANTHER OS01G0167750 PROTEIN 6 650 IPR044175 -
Bisa11g1618 653 Pfam PPR repeat family 551 598 IPR002885 -
Bisa11g1618 653 Pfam PPR repeat family 171 217 IPR002885 -
Bisa11g1618 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1618 404 634 Glycosyltransferase AT1G05670 27.778 2.30e-16 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1618 11 36999588 37001549 Bisa11g1618 11 36999588 37001549 ECH