Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1555 ATGGTCTCTGAATCGGAGCTTATCGGCCGGCTCCGCGAGTTTCTTCGAAACTCCGATCTTAACACTACCACCACTGCTACAGTGCGCCGGCAACTGGAGAAGGATTTTGGAATCGATTTATCCGATAGGAAGGCGTTCATTAGGGAACAGGTCGACTTGTTCCTTCAGAGCGAGCACGAGCAACCCAAGGAGGAACCAGAAGAACCGGAAGACGAAGAAGATCAAAAAGATGAGGCTGAGCCTGAATCCGAAGAAAGCGAAGATTCCAATGAAGAAATGCACGGGGATGAAGAAGGAGAGGAAGAAAAAGCGAATCGTGGCAAAAATGGGAAGGACCATAAACGATCTAAAAAGTCAGGAAATGAGGTAAGAAAAAAAGGTGGTGGTTTTTGCAAATTATGTAGTCTGTCTCCACAACTTCAGGAATTTGTTGGAGCACCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAGAATTTGCAAGACACGAATAACAGGCGGATTATAATTTGTGATGAACCTCTGCGTGCCCTTTTTGGCGTTGATTCCATTGACATGTTTCACATGAATAAAGTATTGTCAAAGCATATTTGGCCGTTGGATTCTGTGGATGTTGTTCGGATGAAGCCGGTACCAAAGGAAAAGCAGAAGAAGCAAGAAAGAGAAGAAGATCCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGTTTTCTTGCTCCTCTTCAACTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGCACTATCAAGGGCTGATGTCATAAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATTTGTGATGAGAAGTTGAAAGAACTCTTCGATGTTGACTCCTTCAATGGCTTCACAGTTACGAAACTACTGGCTCCTCATTTCATAAAATCAGAGCAGTGA 993 0.43 MVSESELIGRLREFLRNSDLNTTTTATVRRQLEKDFGIDLSDRKAFIREQVDLFLQSEHEQPKEEPEEPEDEEDQKDEAEPESEESEDSNEEMHGDEEGEEEKANRGKNGKDHKRSKKSGNEVRKKGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDTNNRRIIICDEPLRALFGVDSIDMFHMNKVLSKHIWPLDSVDVVRMKPVPKEKQKKQEREEDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGESALSRADVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVTKLLAPHFIKSEQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1555 330 CDD SWIB-MDM2_like 253 325 - -
Bisa11g1555 330 ProSiteProfiles SWIB/MDM2 domain profile. 248 327 IPR003121 -
Bisa11g1555 330 Pfam DEK C terminal domain 2 55 IPR014876 -
Bisa11g1555 330 Pfam SWIB/MDM2 domain 133 204 IPR003121 -
Bisa11g1555 330 Pfam SWIB/MDM2 domain 252 325 IPR003121 -
Bisa11g1555 330 SMART swib_2 249 330 IPR019835 -
Bisa11g1555 330 SMART swib_2 130 209 IPR019835 -
Bisa11g1555 330 MobiDBLite consensus disorder prediction 217 245 - -
Bisa11g1555 330 SUPERFAMILY SWIB/MDM2 domain 125 209 IPR036885 -
Bisa11g1555 330 MobiDBLite consensus disorder prediction 217 248 - -
Bisa11g1555 330 SUPERFAMILY DEK C-terminal domain 3 56 - -
Bisa11g1555 330 CDD SWIB-MDM2_like 134 204 - -
Bisa11g1555 330 MobiDBLite consensus disorder prediction 56 123 - -
Bisa11g1555 330 ProSiteProfiles SWIB/MDM2 domain profile. 129 206 IPR003121 -
Bisa11g1555 330 MobiDBLite consensus disorder prediction 64 98 - -
Bisa11g1555 330 Gene3D SWIB/MDM2 domain 243 330 IPR036885 -
Bisa11g1555 330 Gene3D - 1 59 - -
Bisa11g1555 330 FunFam Upstream activation factor subunit 124 212 - -
Bisa11g1555 330 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Bisa11g1555 330 SUPERFAMILY SWIB/MDM2 domain 246 328 IPR036885 -
Bisa11g1555 330 Gene3D SWIB/MDM2 domain 124 211 IPR036885 -
Bisa11g1555 330 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1555 Bisa-ChrBisa11 36229557 36235114 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bisa11g1555 SWIB 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1555 11 36229557 36235114 Bisa11g1555 11 36229557 36235114 ECH