Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1252 ATGGACTCACAACAGGGGAATCTATTCGAGACCGCTTCGCAACCGGACACTGGCAACGACGCATACACTTTTCTTGAATTTAACACTCAGGGGGAGGATTTTGACTACCCGGAGTTCCAAGACCCGATTAGGTCAGCGGTAGCTTGGCCCACTCCGTCCGATTCACTGGTTGACCCTTCGGAACGTGGCGGTGGAGGTTCTGATCACCAGTCTGATGCCTCGCCTGTTTCAGCAGCTCCAGGAAGCGCCACTAAAAGCCGGGCAACCGGGTCGGGCAGCAGCGGGACCAGCCAGATGGTTGACACCCTGGCTGCTGGGATGAGTGGGTTGAATTTTGAGGACACTGGGGATGATGACAATTATGAATTTGGTAAAGGAGATTTCACTGAACATGCTTGCCGGTATTGTGGGGTGTCGAATCCAGCATGTGTTGTGAGGTGTAATGTGCCTTCGTGTCGCAAATGGTTTTGTAATTCACGGGGGAACACGTCGGGTTCACATATCGTAAATCACCTGGTTCGAGCAAAGCACAAGGAAGTTTGTCTTCACAAAGATAGTCCTTTGGGGGAAACAATTCTTGAATGCTACAACTGTGGATGCCGTAATGTGTTTCTCCTTGGATTTATTTCTGCCAAGACAGAAAGTGTAGTTGTTCTTCTATGTCGTGAACCTTGCTTGAGTGTTAATGCATTGAAAGATATGAATTGGGATCTCAGTCAATGGTGTCCCTTAATTGATGATAGATGTTTCCTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTGAGGGCACGCCAGATAAGTGCTCAGCAAATTAATAAGGTGGAAGAACTTTGGAAAACAAACCCTGATGCTTCTCTTGAGGACCTCGAGAAACCTGGTGTAGATGATGAACCTCAGCCTGTGGCTTTAAAATATGAAGATGCATATCAGTATCAAAATGTTTTTGCGCCACTCATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAATGTTACAATTCGATGGGATATTGGTCTGAATAAGAAGCGCATTGCATACTTTGTATTCCCAAAGGAAGATAATGAGTTGCGTCTTGTACCCGGTGATGAATTACGATTGCGTTACTCTGGAGATGCTGCACATCCAGCATGGCAGTCAGTGGGACATGTGATTAAGCTAACTGCACAAGAGGAAGTTGCTCTTGAGCTTCGTGCAAATCAGGGGGTTCCAGTTGATGTAAACCATGGCTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATCGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTCAGCGGGTATATTTACCATCACCTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATACATTGCCTCGTCGCTTTGGTGCACCTGGGCTTCCAGAGCTTAACGCATCTCAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATCCAAGGTCCTCCTGGAACTGGTAAGACAGTAACTTCTGCTGCAATTGTATATCACATGGCAAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTGGCTGTAGATCAGCTTGCTGAAAAGATAAGTGCTACTGGGTTGAAGGTTGTTAGACTGTGTGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTGGAACACTTAACACTTCATTATCAGGTTCGGAATCTTGACACATCTGACAAGAGTGAACTTCACAAATTACAACAACTGAAAGATGAACAAGGAGAACTTTCCAGTAGTGATGAGAAGAAGTACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGCACATGTACTGGTGCTGGAGATCCTAGGCTGGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCTACTCAAGCAACAGAACCTGAATGCCTCATTCCTTTGGTTCTTGGGGTGAAGCAGGTTGTTCTTGTCGGTGATCATTGTCAGCTTGGTCCTGTCATTATGTGCAAGAAAGCAGCTCGTGCAGGGCTTGCACAGTCACTCTTTGAACGCCTTGTTCTACTTGGTGTTAAACCAATTAGGTTGCAGGTCCAATACCGTATGCATCCATCTCTCTCAGAATTTCCTTCTAATAGTTTTTATGAAGGCACTCTACAAAATGGAGTCACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCTTGGCCTGTGCCCAATCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGGACATCTTATTTAAATAGAACTGAGGCTGCAAATGTTGAAAAGATTGTTACTACTTTCTTGCGGAGTGGTGTAGTCCCTAGTCAGATTGGTGTGATAACACCTTATGAGGGACAAAGGGCTTATATTGTGAATTACATGTCAAGAAATGGTGCCCTCAGGCAGCAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTTTATCATGTGTAAGAAGCAATGAGCATCAGGGCATTGGGTTCCTGAATGATCCCCGGAGGCTCAATGTTGCTTTGACCAGAGCTAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCACTTTGGAATAGCTTGTTGACACACTACAAGGAACATGAGTGCTTGGTTGAAGGGCCTTTAAGTAATTTAAAGCAGAGTATGGTTCAGTTCCAAAAACCCAAGAAGATTTACAATGATAGGAGGCTTTTTTATGGCAGTGGTCCTGGAGTTGTGGCCAGTGATAATTTTGGGTCAATCGTCTCTGGCATAACTTCAGACCGGAAGAGTGGCCGGGGTAGGGGATCTTATATGCCTCCTGGTCCATCAAATGGAACCCATAAGCCTGGTGTGCATCCTACTGGTTATCCTATTCCAAGGGTTCCACTGCCACCTTTTCATGGTGGTCCCCAATCTCAGCCATATGCCATTCCATCTCGTGGTGCTGTTCATGGCCCTGTTGGGGCAGTCCCTCATGTACCACCTCCAGGGAGTAGGGGCTTTGGTGCTGGACGAGGTAATTCTGCTGCCACAGTTGGCAATCATCTTCCGCACCAGCAAGGAACACAACAGTCTATTGGGAATCTTGGATCTTCCTTTAACTTCCCAGCTCTGGAAAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTGTCACAACCTGGGTTTGCCAATAATATGTCAGTTCAAGGGGCAGGCCAATCATTTAGAGATCAGTTTTCTGTGCCAGGAATGTCTCAGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTTAATGATTTTTCTACACAGGCTTCTCAGAGTGGGTATGCTGTTGATTATGTCACACAAGGCACACAAGGTGGATTCCCTGGAAACTTTATGAACCAGAATTCTCAAACTGGATATTCGCGTTTTGGTTCTGGAAATGATTTCATGTCTCAGGACTACATGACCCATGGATCACAAGGTCTTTTCACTCAGGTTGGCTTCAATGATCCGCTGCAAGATGAAGCATCACAGAGCCAATTTGGTGTGGCCAATGCCAACCCTCTGCAGTCTCAGGGCCTGATGAATTCTCTTTACTCCCAGCCTTTTGCTCACTATAACACGCAGCCACTGAACATGCAGGCTTCCCAACCACAGCCTCAGGGTCAGAACTCCCAAAATCAGAAAATACACTATAACAGTTGA 3798 0.4534 MDSQQGNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFQDPIRSAVAWPTPSDSLVDPSERGGGGSDHQSDASPVSAAPGSATKSRATGSGSSGTSQMVDTLAAGMSGLNFEDTGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCTGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLFYGSGPGVVASDNFGSIVSGITSDRKSGRGRGSYMPPGPSNGTHKPGVHPTGYPIPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPPPGSRGFGAGRGNSAATVGNHLPHQQGTQQSIGNLGSSFNFPALENPNSQPSVGGPLSQPGFANNMSVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVNDFSTQASQSGYAVDYVTQGTQGGFPGNFMNQNSQTGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDEASQSQFGVANANPLQSQGLMNSLYSQPFAHYNTQPLNMQASQPQPQGQNSQNQKIHYNS 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 70 99 - -
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 990 1006 - -
Bisa11g1252 1265 PANTHER DNA2/NAM7 HELICASE FAMILY 235 1031 IPR045055 -
Bisa11g1252 1265 CDD SF1_C_Upf1 717 906 IPR047187 -
Bisa11g1252 1265 Gene3D - 567 619 - -
Bisa11g1252 1265 Pfam AAA domain 694 889 IPR041679 -
Bisa11g1252 1265 FunFam regulator of nonsense transcripts 1 homolog 337 425 - -
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 1054 1084 - -
Bisa11g1252 1265 FunFam Regulator of nonsense transcripts 1 716 927 - -
Bisa11g1252 1265 Gene3D - 337 425 - -
Bisa11g1252 1265 Pfam Type III restriction enzyme, res subunit 487 560 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bisa11g1252 1265 Pfam RNA helicase (UPF2 interacting domain) 131 284 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bisa11g1252 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 650 IPR014001 -
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 1237 1265 - -
Bisa11g1252 1265 Pfam AAA domain 580 684 IPR041677 GO:0004386
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 958 1018 - -
Bisa11g1252 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 911 IPR027417 -
Bisa11g1252 1265 CDD DEXXQc_UPF1 481 716 - -
Bisa11g1252 1265 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 125 284 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bisa11g1252 1265 CDD 1B_UPF1-like 337 424 IPR040812 -
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 1 26 - -
Bisa11g1252 1265 Gene3D - 445 715 IPR027417 -
Bisa11g1252 1265 Pfam RNA helicase UPF1, 1B domain 336 425 IPR040812 -
Bisa11g1252 1265 Gene3D - 716 927 IPR027417 -
Bisa11g1252 1265 CDD ZBD_UPF1-like 132 254 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bisa11g1252 1265 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1252 Bisa-ChrBisa11 31434232 31447936 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1252 11 31434232 31447936 Bisa11g1252 11 31434232 31447936 ECH