LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g0712	ATGGTTTCTCCTCCTTCCCCTCAAGCTTCTTTGTGTCTCTCTTTTCTTCTGCTATTCTCCCTCTTATGTGTAGAAGGAGGAAAGAGTTCCTCTCCGAAGGCCACCAAGATTGGCCAAGGCTATCGCTTAGTCTCCATTGAAGAGACCTCCGATGGTGGCCTCGTAGGTCACCTCCAAGTCAAGCAGAAGAACAAAATCTACGGCCCTGATATCCCCCTCTTGCAGCTCTATGTCAAGCACGAGACGGATAATCGCTTGAGGGTACATATCACCGACGCCGAGAAGCAGAGATGGGAAGTACCGTACAATCTCTTGCCGAGAGAGCAGCCTCCTGCTCTGAAGCAGACGATTGGAAGGTCGAGGAAGAACCCTATTTATGTTTCGGAGTACTCCGGGTCGGATCTAATTTTCAGCTACATTTCAGACCCGTTTAGCTTCAAGGTGAAAAGGAAGTCGAATGGGCAGGTTCTCTTCGATTCGAGCTGCGATGAATCAGACGCATATGGCCCAATGGTATTCAAGGATCAGTACCTCGAGATTTCGACGAAATTGCCCAAAGATGCGTCGCTGTATGGTTTCGGGGAGAACACACAGCCTCACGGCATTAAGCTGTACCCGAATGATCCGTACACTCTGTACACGACGGATATATCAGCCATTAATGTCAATGCCGATCTCTATGGGTCGCACCCGGTATATATGGATCTCAGAAACGTAGGCGGCGAGCCTTCTGCACACGCTGTTCTGTTGTTGAATAGCAATGGGATGGATGTGTTTTACAGAGGATCTTCTTTGACTTACAAGATTATTGGAGGCGTCTTCGATTTTTACTTCTTTTCAGGGCCTACTCCTCTGAACGTTGTTGATCAGTATACTTCCTTAATTGGTAGACCAGCTCCAATGCCTTACTGGTCATTTGGATTCCATCAATGCAGATGGGGTTACCATAACCTATCTGTTGTAGAAGATGTTGTTGAGAACTACAAGAAGGCTCAAATTCCTCTTGATGTGATCTGGAATGATGACGATCACATGGATGGGCACAAAGACTTCACACTCAACCCTGTCAACTACCCTCGACCAAAGCTCTTAGCCTTCCTAGACAAAATACACAGCATTGGTATGAAATACATTGTCATTATTGATCCAGGAATTGGTGTTAATGCCAGTTATGGTGTATATCAGAGGGGCATGGCTAATGATGTTTTTATCAAGTATGAAGGCGAACCCTACTTGGCTCAAGTTTGGCCAGGGGCTGTATACTTTCCTGATTTTCTTAATCCCAAAACAGTTTCTTGGTGGGGTGATGAGATCCGCCGCTTCCATGAACTTGTTCCCGTTGATGGCCTATGGATTGACATGAATGAAGCTTCAAATTTCTGTTCTGGAAAGTGCAAAATTCCCAAGGGCAAGCAGTGCCCTTCTGGAACCGGACCTGGATGGGAGTGTTGCTTAGATTGCAAAAACATTACGAACACAAGATGGGATGACCCACCGTATAAGATAAATGCTTCTGGTAAGCAGGCTCCAGTAGGCTTCAAAACCATAGCAACTAGTGCAGTCCACTACAATGGTGTTTTGGAATATGATGCTCACAGTATCTACGGTTTCTCTCAAGCCATTGCAACTCACAAGGCCCTTCAAGGGCTTCAAGGGAAACGGCCATTTATCCTGTCCCGCTCCTCCTATGTGGGTTCCGGTAAATATGCTGCTCATTGGACTGGCGACAACAAGGGTACATGGGAGGACTTGCGGTACTCCATATCTACAATGCTCAATTTTGGTATATTTGGGGTTCCAATGGTTGGTTCTGACATATGTGGGTTCTACCCAGCACCAACTGAAGAGCTTTGCAACCGATGGATTGAAGTAGGTGCTTTCTACCCTTTCTCAAGGGATCATGCAAACTTCTACTCCCCAAGACAAGAGCTTTACCAATGGGAGTCAGTTGCTGAGTCTGCTCGAAACGCCTTGGGAATGAGGTATAAGCTCCTCCCTTACCTATACACGTTGAACTATGAGGCTCATATTAGCGGAGCCCCGATTGCGAGGCCGCTCTTCTTCTCATTCCCAAGCTACACTGAATGCTATGGTCTCAGCACCCAGTTCTTGCTGGGGAGCAGTCTTATGATCTCTCCGGTGCTTGAGCAGGGAAAAACCCAAGTGAAAGCACTCTTCCCTCCCGGCTCCTGGTACAGTATGTTTGATTTAACACATACCATTGTTTCGAACAACGGAGTCTATGTCACCCTTGATGCTCCTCTGCATGTGGTCAATGTGCATTTGTATCAGAACACCATTCTCCCGATGCAGCAGGGAGGAATGCTTTCCAAGGAAGCCAGAATGACACCTTTCAGCCTCGTGGTTACCTTCCCATCTGGTTCCACCGAAGGAGAAGCTAAAGGAAACCTTTACCTTGACGATGATGAGCTGCCAGAAATGAAGCTTGGAAATGGCTATTCGACATACATTGATTTCTATGCAAGTTTGAAACAAGGAAGCGTGAAGGTTTGGTCAGAAGTCCAAGAGAGCAAGTTTGCTTTAGATAAAGGTTGGATTATTGAGAAGGTAACTGTGTTGGGATTATATGGAAGTGGTGCTCCATCTGCAGTTGAGATTGATGGAAAACCAGTGGCGGGTGGATCAGATGTCGAGATTAGTACATTAGAGCACAAGTATTTGCAGGAACAGCAAGAGGGTGGAGAGAAGAAGACAATGATAGTGGAGGTAAAGGGATTGAAAATCCCTGTGGGTAAAAGTTTTGCATTGAACTGGAAAATGGGGATTTGA	2790	0.4631	MVSPPSPQASLCLSFLLLFSLLCVEGGKSSSPKATKIGQGYRLVSIEETSDGGLVGHLQVKQKNKIYGPDIPLLQLYVKHETDNRLRVHITDAEKQRWEVPYNLLPREQPPALKQTIGRSRKNPIYVSEYSGSDLIFSYISDPFSFKVKRKSNGQVLFDSSCDESDAYGPMVFKDQYLEISTKLPKDASLYGFGENTQPHGIKLYPNDPYTLYTTDISAINVNADLYGSHPVYMDLRNVGGEPSAHAVLLLNSNGMDVFYRGSSLTYKIIGGVFDFYFFSGPTPLNVVDQYTSLIGRPAPMPYWSFGFHQCRWGYHNLSVVEDVVENYKKAQIPLDVIWNDDDHMDGHKDFTLNPVNYPRPKLLAFLDKIHSIGMKYIVIIDPGIGVNASYGVYQRGMANDVFIKYEGEPYLAQVWPGAVYFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEASNFCSGKCKIPKGKQCPSGTGPGWECCLDCKNITNTRWDDPPYKINASGKQAPVGFKTIATSAVHYNGVLEYDAHSIYGFSQAIATHKALQGLQGKRPFILSRSSYVGSGKYAAHWTGDNKGTWEDLRYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANFYSPRQELYQWESVAESARNALGMRYKLLPYLYTLNYEAHISGAPIARPLFFSFPSYTECYGLSTQFLLGSSLMISPVLEQGKTQVKALFPPGSWYSMFDLTHTIVSNNGVYVTLDAPLHVVNVHLYQNTILPMQQGGMLSKEARMTPFSLVVTFPSGSTEGEAKGNLYLDDDELPEMKLGNGYSTYIDFYASLKQGSVKVWSEVQESKFALDKGWIIEKVTVLGLYGSGAPSAVEIDGKPVAGGSDVEISTLEHKYLQEQQEGGEKKTMIVEVKGLKIPVGKSFALNWKMGI	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g0712	929	SUPERFAMILY	Glycosyl hydrolase domain	681	761	-	-
	Bisa11g0712	929	Pfam	N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase	53	186	IPR031727	-
	Bisa11g0712	929	Gene3D	-	766	928	IPR013780	-
	Bisa11g0712	929	SUPERFAMILY	(Trans)glycosidases	287	679	IPR017853	-
	Bisa11g0712	929	FunFam	Alpha-glucosidase 1	34	297	-	-
	Bisa11g0712	929	PANTHER	ALPHA-GLUCOSIDASE	59	871	-	-
	Bisa11g0712	929	CDD	GH31_N	178	296	-	-
	Bisa11g0712	929	SUPERFAMILY	Galactose mutarotase-like	37	284	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Bisa11g0712	929	Gene3D	-	664	763	IPR013780	-
	Bisa11g0712	929	Pfam	Galactose mutarotase-like	188	256	IPR025887	-
	Bisa11g0712	929	Pfam	Glycosyl hydrolases family 31	277	768	IPR000322	GO:0004553\|GO:0005975
	Bisa11g0712	929	CDD	GH31_MGAM_SI_GAA	296	676	-	-
	Bisa11g0712	929	Gene3D	glycosyl hydrolase (family 31)	34	297	-	-
	Bisa11g0712	929	FunFam	Alpha-glucosidase 1	664	764	-	-
	Bisa11g0712	929	ProSitePatterns	Glycosyl hydrolases family 31 active site.	449	456	IPR030458	-
	Bisa11g0712	929	Gene3D	Glycosidases	298	663	-	-
	Bisa11g0712	929	FunFam	Maltase-glucoamylase, intestinal	298	663	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g0712	Bisa-ChrBisa11	21399148	21403452	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g0712	37	929	Glycoside Hydrolase	AT1G68560	77.044	0.0	1479

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa11g0712	11	21399148	21403452	Bisa11g0712	11	21399148	21403452	ECH