Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1579 ATGGCGCTGGAGTATTTCCCTGCTTTCCGCCAGTTCCTCCGTCGTGTATGCTGCTTTACTCAATCTCCTCCACCACGCCTAGTCATAGCTTTACGCTTAAACCCTTCTATACGTTCTTACTGTCTTCCTTCCTCTAAACCCTCAAGCTCAACCTCCAAAAATTTTAAGCCCCATTCCACTTCTAAAGAGAGTTACACGTTTGTTCTGAAGAAAGATGAGCGCTTGGCGGAGTCTGTTGGTGCTGCTCATGAGCTTGGGCTTGTTGAGAACACGAGCACGATTGCTGCCATTGTCACATCCCTGGGGGGTCCCCCTGGTGCTGTGGGAATCGTTCGACTTTCGGGGCCTTCTGCGGTGGATATTGTTGGTCGCGTATTTCGACCTGCGAGGAAAAGGAAGAGGAGGTGGGAGCCCACGAGCCATGTCGTGGAGTATGGTGTGGTGCTCGATTCAGTTGGGAATGTGATCGATGAGGTTTTAGCAGTGCCCATGTTAGCCCCGAGGTCTTACACTCGTGAAGACGTGATTGAGCTTCAATGTCATGGGAGTGAAGTGTGTCTACGCCGTGTATTGAGAACTTGTTTGGAAGCTGGAGCAAGACTTGCTGAACCAGGTGAATTTACTCTTCGTGCTTTTCTAAATGGTCGATTAGATCTATCTCAGGCTGAAAATGTTGGAAGACTAATAACAGCCAAATCAGTGGCTGCTGCAGATGCAGCACTGGCAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCACTGAGAATACAGTGCATTGAGCTGCTTACTGAGATTGAAGCTCGTTTAGATTTTGATGATGAGATGCCACCTCTAGATTTAAATCTAATCATGGATGAAATACATACTATGTCCCAAGATGTGCAGAATGCACTGGAGACAGCCAATTATGACAAGCTTCTTCAATCTGGTCTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCTATAGTCACTGAAATTGCTGGAACTACCCGGGATGTGATTGAAGCAAGTGTCAGCTTAAATGGTATTCCTATAACCCTTCTTGATACTGCAGGTATCAGGGATACTGATGACATTGTAGAAAAGATCGGCGTAGAAAGATCTGAAGCAGTTGCTATGGGTGCTGATTTGATTATCATGACTGTTAGTGCTGTTGAAGGATGGACTTCGGAAGACACCAAACTTCTAGAAAGGATTCAATCTACTAAGAAATCAATGGGATCTTTCACCCCAGCAATCCTTGTGGTCAACAAGATAGACTGTGCTCCCTGTGCCGGGACTGAATGGGTCAAAGAGTATAACAATTTTTTCAGTAAGCATGTATTTACATGCGCTGTCACCGGTGAAGGATTACAAGAGTTGGAGAGGGCAGTGTTGGAGATGGTGGGCCTTAACAGCATTCCTACTGGGGGACGTAAATGGACTGTTAATCAGAGACAATGCGAACAGCTTGTTCGGACGAAGGAAGCTTTTGAAAGACTAAAATCATCAATAGAGGAGAAACTACCCCTGGATTTTTGGACAATTGATTTGAGGGAGGCCGCATTGGCGCTTGGGCAGATTAGTGGAGAAGATATATCGGAAGATGTCTTATCCAATATATTTGGAAAATTCTGTATTGGTAAATAG 1677 0.455 MALEYFPAFRQFLRRVCCFTQSPPPRLVIALRLNPSIRSYCLPSSKPSSSTSKNFKPHSTSKESYTFVLKKDERLAESVGAAHELGLVENTSTIAAIVTSLGGPPGAVGIVRLSGPSAVDIVGRVFRPARKRKRRWEPTSHVVEYGVVLDSVGNVIDEVLAVPMLAPRSYTREDVIELQCHGSEVCLRRVLRTCLEAGARLAEPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLIMDEIHTMSQDVQNALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSLNGIPITLLDTAGIRDTDDIVEKIGVERSEAVAMGADLIIMTVSAVEGWTSEDTKLLERIQSTKKSMGSFTPAILVVNKIDCAPCAGTEWVKEYNNFFSKHVFTCAVTGEGLQELERAVLEMVGLNSIPTGGRKWTVNQRQCEQLVRTKEAFERLKSSIEEKLPLDFWTIDLREAALALGQISGEDISEDVLSNIFGKFCIGK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1579 558 FunFam tRNA modification GTPase MnmE 88 216 - -
Bisa09g1579 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 474 IPR027417 -
Bisa09g1579 558 CDD TrmE_N 92 215 IPR018948 -
Bisa09g1579 558 Hamap tRNA modification GTPase MnmE [mnmE]. 92 558 IPR004520 GO:0003924|GO:0005525|GO:0006400
Bisa09g1579 558 Gene3D - 312 486 IPR027417 -
Bisa09g1579 558 Pfam 50S ribosome-binding GTPase 313 434 IPR006073 GO:0005525
Bisa09g1579 558 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 106 558 IPR004520 GO:0003924|GO:0005525|GO:0006400
Bisa09g1579 558 FunFam tRNA modification GTPase MnmE 312 486 - -
Bisa09g1579 558 Coils Coil 497 517 - -
Bisa09g1579 558 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 311 479 IPR031168 -
Bisa09g1579 558 Pfam GTP-binding protein TrmE N-terminus 93 216 IPR018948 -
Bisa09g1579 558 Pfam MnmE helical domain 219 555 IPR025867 -
Bisa09g1579 558 Gene3D Probable tRNA modification gtpase trme; domain 1 80 216 IPR027266 GO:0005515
Bisa09g1579 558 Gene3D tRNA modification GTPase MnmE domain 2 217 558 IPR027368 -
Bisa09g1579 558 CDD trmE 309 479 IPR031168 -
Bisa09g1579 558 NCBIfam small GTP-binding protein domain 312 438 IPR005225 GO:0005525
Bisa09g1579 558 PANTHER TRNA MODIFICATION GTPASE GTPBP3 66 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1579 Bisa-ChrBisa09 23583308 23587962 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1579 09 23583308 23587962 Bisa09g1579 09 23583308 23587962 ECH