Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g1224 ATGGCTTCTGCATCTGCTAGATACCCATTGGGATTTGCCGTCCACTCCCAGGGAAAGCTGTGTCCTATCCCTCGGAAAGTGGACTGTTCGAGCTCCGAGTTTCCTCTTAATATGGACGCTTCTAGAATTAGTTTGTGCCCAAGTTCTGCTTCTTCCACAGGTTCAAAGATGCAGGGATTAATGAACCGAATATGTGCATGTCCTAATGTTGATGATTTCCACTGGGAGGAAGTCCCAACACCCATACTTGATGCAGTTGAAAATCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAACTCAAGCAACTAGCAGATGAAATCCGTTTGGATCTGTCTTCTATGATGTCAGATGCACAAATCTCATTTAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACACCATGTATTTCATGCTCCAGTGGACAAGATCTTGTGGGATGTTGGAGATCAAACATATGTACATAAGATTCTTACAGGAAGGCGATCTCTCATGAAGACAGTTAGACAAAAGGATGGCCTTTCTGGCTTTACATCCCGATTTGAGAGTGAATATGATGCATTTGGGGCTGGTCATGGATGCAACAGTATTTCTGCAGGACTTGGCATGGCGGTTGCACGGGATATAAAGGGGAGGCGAGATCGTGTAGTTGCAGTTATCGGCAATTTGACAACTATGGCTGGTCAGGTTTATGAGGCAATGAGCAATGCAGGGTATTTGGACTCAAATATGGTAGTCATTTTGAATGACAGCCGTCACTCTTTACATCCAAAAGATGAGGAGGGCCCAAAGACATCAATCACTGCACTATCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCCTTCCGAAAGCTTAGAGAAGTTGCTAAAGGTGTTACAAAACGAATTGGTGGAGGCATGCATGAATTGGCAGCCAAAGTTGACGAATATGCTCGTGGTATGATGGGTCCGCCAGGTTCCACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCTGTGGATGGACACAACATTGAAGAGCTAATTTGTGTTCTAGAGGAAGTAGCATCTCTTGATTCAACAGGCCCTGTCCTAGTTCATGTAATAACTGATGAAAATCAAGAAGCAGTACATAAGCAGAAAAGTAATACAGCAGACAGGCAGCAGGATGGCTCCATCAACTTTGATTCATTAAATCAAGCCATTCAACCTCGAACATATAGTGATTGCTTTGTGGAAACTTTGGTGATGGAAGCAGAGAAAGACAAAGATGTTGTGGTAGTTCATGCAGGAGATATGATGGAACCATCATTTCAACTGTTTCAAAAAAAAATGCCTGATAAGTTTTTTGATGTGGGGATGGCTGAGCAACATGCTGTTACATTTGCTTCTGGTTTGGCTTGTGGTGGGTTGAAGCCATTTTGCATAATACCTTCCTCCTTCCTACAAAGAGCTTATGACCAGGTGATCCACGATGTTGATCAACAGAAAACTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCGTCCAATGTGGAGCATTTGATATAACCTTCATGTCATGCTTGCCAAACATGATCGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTCATGACGTCAATGATCGGCCAATTTGCTTCCGGTATCCAAGGGGTGCCGTAGTTGGTAACAACTACACTGTATGCAATGGAACACCCCTTGAGATTGGAAAAGGGAGGGTTCTTGTTGAAGGTAAGGAAGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGCCTAAAAGCTCACACACTTCTTGCAAAGCTTGGCATTGAGGTGACAGTGGCTGATGCAAGGTTCTGCAAGCCACTGGACATCAATCTTCTCAGGCATCTCTGTAAGCACCATTCTTTCCTGATTACTGTTGAGGAAGGATCAATTGGGGGATTTGGTTCGCATGTTGCTCAATTTATTGCCCTTGATGGACTGCTTGATGGAAGAACTAAGTGGCGACCCATTGTCTTACCTGACAGCTATATAGAGCATGCATCGCCAACGGAGCAGCTTGATCAAGCAGGGCTGACTGGACATCATATTGCTGCCACGGCATTGAGTTTGCTGGGCCATACGCGTGAAGCCCTCCACTTTATGTGTTCCTGA 2172 0.4466 MASASARYPLGFAVHSQGKLCPIPRKVDCSSSEFPLNMDASRISLCPSSASSTGSKMQGLMNRICACPNVDDFHWEEVPTPILDAVENPLCLKNLSLKELKQLADEIRLDLSSMMSDAQISFKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYVHKILTGRRSLMKTVRQKDGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRDRVVAVIGNLTTMAGQVYEAMSNAGYLDSNMVVILNDSRHSLHPKDEEGPKTSITALSSTLSRLQSSKSFRKLREVAKGVTKRIGGGMHELAAKVDEYARGMMGPPGSTLFEELGLYYIGPVDGHNIEELICVLEEVASLDSTGPVLVHVITDENQEAVHKQKSNTADRQQDGSINFDSLNQAIQPRTYSDCFVETLVMEAEKDKDVVVVHAGDMMEPSFQLFQKKMPDKFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQKTPVRFVITSAGLVGSDGPVQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATAHDVNDRPICFRYPRGAVVGNNYTVCNGTPLEIGKGRVLVEGKEVALLGYGSMVQNCLKAHTLLAKLGIEVTVADARFCKPLDINLLRHLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRTKWRPIVLPDSYIEHASPTEQLDQAGLTGHHIAATALSLLGHTREALHFMCS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g1224 723 Coils Coil 97 117 - -
Bisa09g1224 723 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 401 569 - -
Bisa09g1224 723 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 55 718 IPR005477 GO:0008661|GO:0016114
Bisa09g1224 723 Pfam Transketolase, pyrimidine binding domain 403 563 IPR005475 -
Bisa09g1224 723 SUPERFAMILY TK C-terminal domain-like 575 712 IPR009014 GO:0003824
Bisa09g1224 723 SMART Transket_pyr_3 402 567 IPR005475 -
Bisa09g1224 723 Gene3D - 580 711 IPR009014 GO:0003824
Bisa09g1224 723 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 401 589 IPR029061 -
Bisa09g1224 723 CDD TPP_PYR_DXS_TK_like 408 561 - -
Bisa09g1224 723 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 86 709 IPR005477 GO:0008661|GO:0016114
Bisa09g1224 723 Gene3D - 75 373 - -
Bisa09g1224 723 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 80 464 IPR029061 -
Bisa09g1224 723 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 83 367 IPR005477 GO:0008661|GO:0016114
Bisa09g1224 723 Pfam Transketolase, C-terminal domain 580 703 IPR033248 -
Bisa09g1224 723 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 580 712 - -
Bisa09g1224 723 CDD TPP_DXS 122 367 IPR005477 GO:0008661|GO:0016114
Bisa09g1224 723 Gene3D - 402 572 - -
Bisa09g1224 723 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 82 712 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g1224 Bisa-ChrBisa09 17696388 17703684 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g1224 09 17696388 17703684 Bisa09g1224 09 17696388 17703684 ECH