Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0320 ATGCCGACGCCGGTCAGCGCAGCGAGGCAATGCTTGACGGAGGAAGCGGCGCGTGCTCTGGACGACGCGGTCGCCGTCGCTCGCCGCCGCAACCATGCGCAGACCACTTCGCTTCATGCTGTATCTGCCTTGCTCGTCTTACCTTCCTCCACTCTCCGGGACGCTTGCACGCGCGCGCGTGTCTGCTCCTATTCTCCGCGTCTCCAGTTCCGAGCTCTGGAGCTCTCAGTGGGTGTGTCTCTCGATCGATTGCCCACCTCCAAAGCCGCTGAGGATGACCCTCCGATATCCAATTCGCTCATGGCCGCGATTAAGCGATCCCAAGCAAACCAGAGGAGGCACCCAGAGAACTTCCATTTGCTTCAGATGCATAGTCAGCAGCAGCAAGCGGCGTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATCCTGTCCATACTCGATGATCCGATTGTGAGCAGAGTTTTCGGGGAAGCAGGGTTTCGAAGCTGCGATGTCAAGTTTGCGTTACGTCAACCTCCTTTAGCGCCAGCTTCTTCTCGTTTCTCCCGGAGCCGTTACGCACCGATCTTTCTGTGCAATCTGCCGGGCTCAGAAATGGATCGTCCGGGTTTCAGCTTCCCGTTCGCGGGCAATCCTGGATACGAAGAAGTAGATGATAATTGTAGAAGGATATCAGAGGTTCTTGTGAGGAAGACTAAGAAAAGTCCCTTACTGATGGGTGTTTACGCAAAGGCTGCTCTACGGAGTTTCACAGAGAAAGTAGAGAGAGGTCGAGCAGGTGTGTTGCCTGTTGAAATAGCTGGTCTGAGTATAATTTGCATTGAGAAGGAGATTGCTGAGTTCTTTCTTGATGGTGGAAGTGAAGATAAGATGGGTTTTAAATTTAAGGAGTTGAGTCGTGCTGTGGAGCAATGCTCGGGTCCAGGTATCGCTGTGAACTTCGGAGGGCTTGAGACATTCGTGGGGGATGGTGTGCCTGGTGGTGCTGTGAACTTTGTTGTCTCACAATTGACAAGCTTATTGGAGATTCATGGTGGGAAATTTTGGTTGGTAGGTACGGCGGGAACCTCTGATATATATTCCAAGTTCCTAGCTTTGTTCCCAAATGTAGAGAAGGATTGGGATCTGCAACTACTGACCATGACATCTGCCACCACTTCATTTGAAGGACTCTACCCTAGGTCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCTTCTGAATTCAAAAAACCAGTAGGCTGTACAAGTCAATCTTTTGTACGCTGTCAAGCATGCAATGAAAAATATGAACAAGAAGTTGCTGATAGTTTGAAGGGAGGTCCTACAACATCGGCATCTAGTTACTCAACAAGCCTGCCTTGGTTGCAACAGGTTAATGTAAATACAGATAAACAATTGGATGTTGCAAAGACTAATGAAGAAATCACAAATTTGAATGCTACCATCTTGGGATTGCAAAAGAAATGGGGTGATGTTTGTCAACGTCTTCATCAAGCTGGATCATTGCCTGAATGTAATATATCCCAAACAAGGTCTCAAGTTCCCTCTCTTGAGGGCTTACGATTTGGTTTGGATCATAAGGAAAGTAGCAGCAAAGATCTACCTCTTGATCAAATCCAATATTCTAATCATAGTCCTTACATGCCTAAAGAGTTAAATGTTATTTACCCACCAAAACAGATATTACGAGTTTCAGTACCTTCTGATACTGTTTGCCTTAATACTGGAACGGACCAGGGAGCAAACCTTTCAAAGAGTCAGCAAACTGATGTGCGGAACTCTTGGGTTGCCCCTTCCCCTGTGGCCAAAATGAGTCAGGTTGACCACAGATCTTCCTCCTCCCTTACCCCTGTGACCACAGATTTGGGATTGGGAACGCTATATTCATCAGCTGCTCAGGAGCCAAATGCCCCAAAAGTACGAGATCATAGAGAGCATCTTCAACACATGTCAGACTCCATTTCAACTGATTTTGATGCTGTGAATGAAAATACTTCAAATCAAATAGCTCGATCTTCTTCTTGCTCTGGTCCTTATTTGGAAGGGAAATTAGATTCAGTAGATTTCAAGTCATGTAATCAACGTCTTACCGAAAGAGTTGACTGGCAGGATGAGGCCATATATGCTATCAGTCAAACTATGTCCCTTTGTAGATCTGGTGCTGGAAAGCATAGTAGCTCAAATGCCAGAGCAGACATATGGCTTGCCTTTTTTGGACCTGATAGAATTGGAAAGAAGAAAATTGCTTCAGCACTTGCAGAGATCATATTTGGAAGTTCTGAAAGCCTAATCTCTGTGAACTTGAATTCCCAGGACAGCAGTTACCCATTAAACTCAGTTTTTGAATGCCAAAATTCATTTTGTTATGATGTACTTCAGAGGAAGACAGTTGTGGACTATATTGCTGGGGAGTTGAGCAAGCAACCCCATTCAGTTGTCTTTCTTGAAAATATAGACAAAGCTGACTTTCTAGTGCAGAATAGCTTGCTCCAGGCAACAAGAACAGGTAAATTTCGAAACTCACATGGGAGGGAAATCAGTATCAATAATGCTATCTTTATTGTAACCTCAACTGTCTCTAAAGGCAGTGGTTCTTTCCTTTTGGAGGAAGAGCCAAAGTTTTCTGAAGAAAGAGTTCTCCAGGCCAAAAGATGTCAAATGCAGTTATTACTGGGAAATATTTCTGGGAATGCCAAAAGAAGTGGTGGCACAAATGACATGGTAACACTGAGTAAAGGGACCTTAAAACCAGAAAGTCCAAATAAAAGAAAGCTGGTTGAAGGAAGTGACTGCAAAGAGCAAGCAACAACGTGCAAGGTACCGAAACAGGTCCTAGAAGCATCAAGATCCTATCTGGATTTGAATATGCCTCTCCAAGAGGTTGAAGAGGACTGGTTAGATGTTTTCTGTGGTCAAATTGATGCCGAAGTAGATTTTAAGCCATTTAATTTTGATGGGCTTGCTGAGAAGTTTCGAAAAAGCATTAGCATACAATTCCAAAGGACATTTGGATCCAGGGTTTTGCTGGAAATCGATTATGAAGTCATGGTACAGATACTAGCAGCCACTTGGTTATCTGACAAGAAAAATGCAGTGGAGGATTGGGTTGAAAATGTACTTGGCAGAAGCTTCAATGAAGCGTTGCAGAAATACCACCCTGAAGCCCAGGGTTCCATGAAACTAGTTACCCGTGAAGGCTTTTTTGTGGAAGAGCAAGCTCCAGGAGCATGCCTTCCAGCTAAAATTAACCTAGGCTAA 3276 0.4499 MPTPVSAARQCLTEEAARALDDAVAVARRRNHAQTTSLHAVSALLVLPSSTLRDACTRARVCSYSPRLQFRALELSVGVSLDRLPTSKAAEDDPPISNSLMAAIKRSQANQRRHPENFHLLQMHSQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDVKFALRQPPLAPASSRFSRSRYAPIFLCNLPGSEMDRPGFSFPFAGNPGYEEVDDNCRRISEVLVRKTKKSPLLMGVYAKAALRSFTEKVERGRAGVLPVEIAGLSIICIEKEIAEFFLDGGSEDKMGFKFKELSRAVEQCSGPGIAVNFGGLETFVGDGVPGGAVNFVVSQLTSLLEIHGGKFWLVGTAGTSDIYSKFLALFPNVEKDWDLQLLTMTSATTSFEGLYPRSSLMGSFVPFGGFFSTPSEFKKPVGCTSQSFVRCQACNEKYEQEVADSLKGGPTTSASSYSTSLPWLQQVNVNTDKQLDVAKTNEEITNLNATILGLQKKWGDVCQRLHQAGSLPECNISQTRSQVPSLEGLRFGLDHKESSSKDLPLDQIQYSNHSPYMPKELNVIYPPKQILRVSVPSDTVCLNTGTDQGANLSKSQQTDVRNSWVAPSPVAKMSQVDHRSSSSLTPVTTDLGLGTLYSSAAQEPNAPKVRDHREHLQHMSDSISTDFDAVNENTSNQIARSSSCSGPYLEGKLDSVDFKSCNQRLTERVDWQDEAIYAISQTMSLCRSGAGKHSSSNARADIWLAFFGPDRIGKKKIASALAEIIFGSSESLISVNLNSQDSSYPLNSVFECQNSFCYDVLQRKTVVDYIAGELSKQPHSVVFLENIDKADFLVQNSLLQATRTGKFRNSHGREISINNAIFIVTSTVSKGSGSFLLEEEPKFSEERVLQAKRCQMQLLLGNISGNAKRSGGTNDMVTLSKGTLKPESPNKRKLVEGSDCKEQATTCKVPKQVLEASRSYLDLNMPLQEVEEDWLDVFCGQIDAEVDFKPFNFDGLAEKFRKSISIQFQRTFGSRVLLEIDYEVMVQILAATWLSDKKNAVEDWVENVLGRSFNEALQKYHPEAQGSMKLVTREGFFVEEQAPGACLPAKINLG 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0320 1091 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 853 867 IPR001270 GO:0005524
Bisa09g0320 1091 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 741 759 IPR001270 GO:0005524
Bisa09g0320 1091 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 820 838 IPR001270 GO:0005524
Bisa09g0320 1091 Gene3D - 10 172 IPR036628 -
Bisa09g0320 1091 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Bisa09g0320 1091 Coils Coil 474 494 - -
Bisa09g0320 1091 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
Bisa09g0320 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 865 IPR027417 -
Bisa09g0320 1091 Pfam AAA domain (Cdc48 subfamily) 741 867 IPR003959 GO:0005524|GO:0016887
Bisa09g0320 1091 Gene3D - 678 899 IPR027417 -
Bisa09g0320 1091 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1060 - -
Bisa09g0320 1091 CDD RecA-like_ClpB_Hsp104-like 694 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0320 Bisa-ChrBisa09 4543231 4548357 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0320 09 4543231 4548357 Bisa09g0320 09 4543231 4548357 ECH
Bisa09g0320 09 4543231 4548357 Bisa05g1649 05 30561667 30566022 ECH
Bisa05g1649 05 30561667 30566022 Bisa09g0320 09 4543231 4548357 ECH
Bisa07g2423 07 54472331 54475643 Bisa09g0320 09 4543231 4548357 ECH