Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0243 ATGGCAGACTCAGATTGTGGGTGGTTTATCTGTGTACAGGTTTTGATAGTGATAATAGCAGCAAAATTATATTTTGATGGGAACAAAATATCAGAGATATATGAGTGTGACGATGAAGTTATTGCTGGAAAAGAAGGAAGCAATGAAAGACCTTGTGATGAGTATTACTTAGTGAAAGAGGGAGAGACTCTCTATTCAATCGCTGCCAAATGCCACGACCCATTTATCATAGAGCGTAATCCTCATATTCACAAAAAAAGGAAAAACCTTTTACTTCCTCTTAGAAGGATTTCCAGAATATCAGAATCCCTACTCTTCTGCACTACAATAATCACAACCTTTGGAAATCCTTCTGCTAAGCCAAAAGGCATCGCAGATTCGTTGGGTGGGATGGAAGAAAAGCTCCCATTCAAGAATCTTCATAGTAGAGAGTATTCGGGCCACAAGAAGAAGGTGCACTCTGTGGCCTGGAATTGCACCGGCACAAAACTTGCTTCTGGTTCTGTGGATCAAACTGCTCGAATATGGTATATTGAGCCACACGGGCACGGTAAGGTCAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTGTGTTGGGACCCCAAACATGCTGATCTGATTGCAACTGCATCGGGTGATAAGACTGTTCGTTTGTGGGATGCTCGTAGTGGGAAGTGCTCGCAACAGGCAGAACTTAGTGGGGAGAATATCAACATCACATACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGATGAGTTGACAATACTGGATGTTCGGAAGTTTAAACCAATTCACAGGCGCAAGTTCGGTTACGAGGTAAATGAGATTGCTTGGAACATGACAGGAGAGATGTTTTTTCTGACAACAGGAAATGGGACGGTGGAAGTATTGTCTTACCCATCTCTTCGGCCTCTTGATACACTCTTGGCCCATACTGCTGGGTGTTATTGCATTGCAATTGATCCGGTAGGAAGATATTTTGCCGTCGGAAGTGCTGATTCTCTGGTCAGCCTGTGGGAAATCTCCGAGATGCTCTGTGTGCGTACCTTCACAAAGCTGGAATGGCCTGTCAGGACAATTAGTTTCAATTATACTGGTGAATATATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATATCAAATGTTCAAACTGGACGAACGGTGCATCAGATTCCTTGTAGGGCTGCCATGAACAGTGTGGAGTGGAATCCAAAATACAATTTACTTGCTTATGCTGGTGACGACAAAAACAAGTATCAAGCTGACGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 1332 0.4287 MADSDCGWFICVQVLIVIIAAKLYFDGNKISEIYECDDEVIAGKEGSNERPCDEYYLVKEGETLYSIAAKCHDPFIIERNPHIHKKRKNLLLPLRRISRISESLLFCTTIITTFGNPSAKPKGIADSLGGMEEKLPFKNLHSREYSGHKKKVHSVAWNCTGTKLASGSVDQTARIWYIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLLAHTAGCYCIAIDPVGRYFAVGSADSLVSLWEISEMLCVRTFTKLEWPVRTISFNYTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0243 443 CDD LysM 55 83 IPR018392 -
Bisa09g0243 443 SMART WD40_4 351 390 IPR001680 GO:0005515
Bisa09g0243 443 SMART WD40_4 393 431 IPR001680 GO:0005515
Bisa09g0243 443 SMART WD40_4 138 177 IPR001680 GO:0005515
Bisa09g0243 443 SMART WD40_4 268 306 IPR001680 GO:0005515
Bisa09g0243 443 SMART WD40_4 309 348 IPR001680 GO:0005515
Bisa09g0243 443 SMART WD40_4 184 224 IPR001680 GO:0005515
Bisa09g0243 443 CDD WD40 143 386 - -
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 176 IPR001680 GO:0005515
Bisa09g0243 443 SUPERFAMILY WD40 repeat-like 140 425 IPR036322 GO:0005515
Bisa09g0243 443 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Bisa09g0243 443 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Bisa09g0243 443 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 176 - -
Bisa09g0243 443 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Bisa09g0243 443 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Bisa09g0243 443 Pfam WD domain, G-beta repeat 190 224 IPR001680 GO:0005515
Bisa09g0243 443 FunFam THO complex subunit 3 131 295 - -
Bisa09g0243 443 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Bisa09g0243 443 Gene3D - 277 438 IPR015943 GO:0005515
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 350 - -
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 233 IPR001680 GO:0005515
Bisa09g0243 443 Gene3D - 130 276 IPR015943 GO:0005515
Bisa09g0243 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 229 - -
Bisa09g0243 443 FunFam THO complex subunit 3 305 439 - -
Bisa09g0243 443 PANTHER THO COMPLEX SUBUNIT 3 THO3 131 440 IPR040132 GO:0006406
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0243 Bisa-ChrBisa09 3383155 3390033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0243 281 439 Miscellaneous Gene Families AT5G08390 22.500 1.84e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0243 09 3383155 3390033 Bisa09g0243 09 3383155 3390033 ECH