LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g2564	ATGGCCACTCAGTGGCTGTTGGTCTTGGTAATGGCGTCTCTACTCCATGGGAATGCAATGCCGATCACGTTTTCTGCCAGGCTGATTCATCGGTTCTCCGAAGAAATGAAGGCGCTCAAGGTTTCAAGTGGTGGGCGTCATAATATGCCTGTTGCCTGGCCAGACAAGAGGAGTATGGACTACTACGAGATGCTTGTCAGAACCGACTTTCTCAAGCAGAAGATGAGGCTTCGAGCTACCTATCAGCTGCTTTTCCCCTCTCACGGCGGTAAAACAATGTCGCTAGGAAACGACTTTGGCTGGTTACATTACACATGGATTAATATTGGGACGCCAAACACTTCATTTCTTGTGGCACTGGATGCCGGGAGTGATCTACTTTGGATTCCATGTGATTGTATACAGTGCGCTCCCCTATCTGCTAGTTACTATGCCAATCTGGATAGAGATCTGAATGAATATAATCCATCTCGTTCAACATCCAGCAAGAAGCTATCCTGCAGCCATCAGTTATGTGAGATGGGATCGAACTGTAAAAGTTCCAAGCAGCAATGTCCTTACACTGTGAATTACTTGTCAGAGAATACATCAAGTTCTGGATTGTTAGTAGAGGACATATTGCATCTTTCATCAAGTGGTGGTGGTGAATCAAACTCTTCTGTTCAGGCTCCAGTCATTATAGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGTCTTATGGGTTTGGGAACTGGGGAAATTTCAGTTCCAAGTTTGCTTGCTAAATCAGGATTGATCCGCAATACTTTTTCAATGTGCTTTAATGATGATGATTCTGGTAGAATATTCTTTGGGGACCAGGGACCAGCCATCCAACAGTCTACTGCATTCTTGCCATTGGATGGAATAGATTCAACATATATCATTGGAGTTGAGACATGTTGCATCAGGAAATCATGTCTTAAGATGACAAGTTTCCAAGCGTTGGTTGATAGTGGAACATCATTTACATTTCTTCCAGGCCATGTATATGAAGCAATTACTGAGGAGTTTGACCAACAAGTGAACTCTTCGAGATCTAGCTTTGAAGGATCCCCTTGGGAGTATTGTTATGCATCCAGTTCGCAAGAGTTGCCCAAGGTTCCCTCCCTATCATTCGTGTTCCAACAGAATAGCAGCTTTTTGGTCCATAATCCTGTTTTTCCATTTTATGACAGTCAGGGACCTGTTGGATTTTGTTTAGCCATACAACCAACCGAAGGAACTATGGGAACCATTGGACAGAACTTCATGACAGGCTACCGGCTCGTATTCGATAGGGAAAACATGAAGCTATCCTGGTCGTACTCAAATTGTGAGGATCTGAGTGTTAATCAGAGTATGCCCATTTCCCCTCCAAATAAGACACCACCAAACCCCTTGCCTACAGATGAGCAGCAGAGAACAAATGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCATCAGCTGCTCCATCTTTAATGATGTCATGCCGACGACCGCATTGGTGCCTTTGTTCGTTTCTTCTGCTTCAACTTGTCACAGGCATTCAAGGTTATCCTCACATCCGCATACAATTTTAA	1617	0.4459	MATQWLLVLVMASLLHGNAMPITFSARLIHRFSEEMKALKVSSGGRHNMPVAWPDKRSMDYYEMLVRTDFLKQKMRLRATYQLLFPSHGGKTMSLGNDFGWLHYTWINIGTPNTSFLVALDAGSDLLWIPCDCIQCAPLSASYYANLDRDLNEYNPSRSTSSKKLSCSHQLCEMGSNCKSSKQQCPYTVNYLSENTSSSGLLVEDILHLSSSGGGESNSSVQAPVIIGCGMKQSGGYLDGVAPDGLMGLGTGEISVPSLLAKSGLIRNTFSMCFNDDDSGRIFFGDQGPAIQQSTAFLPLDGIDSTYIIGVETCCIRKSCLKMTSFQALVDSGTSFTFLPGHVYEAITEEFDQQVNSSRSSFEGSPWEYCYASSSQELPKVPSLSFVFQQNSSFLVHNPVFPFYDSQGPVGFCLAIQPTEGTMGTIGQNFMTGYRLVFDRENMKLSWSYSNCEDLSVNQSMPISPPNKTPPNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSLMMSCRRPHWCLCSFLLLQLVTGIQGYPHIRIQF	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g2564	538	FunFam	Aspartyl protease family protein 1	90	286	-	-
	Bisa08g2564	538	Gene3D	Acid Proteases	91	286	IPR021109	-
	Bisa08g2564	538	SUPERFAMILY	Acid proteases	97	452	IPR021109	-
	Bisa08g2564	538	MobiDBLite	consensus disorder prediction	460	496	-	-
	Bisa08g2564	538	Pfam	Xylanase inhibitor N-terminal	104	286	IPR032861	-
	Bisa08g2564	538	PANTHER	ASPARTYL PROTEASES	23	446	IPR001461	GO:0004190\|GO:0006508
	Bisa08g2564	538	FunFam	Aspartyl protease family protein 1	289	454	-	-
	Bisa08g2564	538	ProSiteProfiles	Peptidase family A1 domain profile.	103	448	IPR033121	-
	Bisa08g2564	538	Gene3D	Acid Proteases	290	454	IPR021109	-
	Bisa08g2564	538	Pfam	Xylanase inhibitor C-terminal	324	448	IPR032799	-
	Bisa08g2564	538	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	328	339	IPR001969	GO:0004190\|GO:0006508
	Bisa08g2564	538	CDD	pepsin_like	107	447	IPR034164	-
	Bisa08g2564	538	PRINTS	Pepsin (A1) aspartic protease family signature	328	339	IPR001461	GO:0004190\|GO:0006508
	Bisa08g2564	538	PRINTS	Pepsin (A1) aspartic protease family signature	424	439	IPR001461	GO:0004190\|GO:0006508
	Bisa08g2564	538	PRINTS	Pepsin (A1) aspartic protease family signature	109	129	IPR001461	GO:0004190\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g2564	Bisa-ChrBisa08	60119051	60124029	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g2564	96	455	Miscellaneous Gene Families	AT1G44130	27.154	5.60e-26	108

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa08g2564	08	60119051	60124029	Bisa08g2564	08	60119051	60124029	ECH