Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2455 ATGAAGGGTGGAACTGTTCAGATAAACTGGCACGAAACCAAACCAGTCCTAACCCTTGATTTCCACCCACTCTCCGCCACTCTCGCCACTGGCGGCGCCGATTTCGACATCAAGCTTTGGTCGATAAATTCAGCAGAAGCACAAAAGAAGCTTCCTGTAGTTACTTATCTGAATAGCCTGTCTTACCATAGTTCTGCAGTAAATGTAATTCGCTTCTCTTCTTCAGGGGAACTGCTGGCATCTGGCGCTGATGGAGGTGACCTTATAATATGGAAGTTACATCCAACAGATACAGGTCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGATGTTCTGGACCTACAATGGTCTCCTGATGCCGCATTTATCATTTCTGGGTCAGTTGATAATAGTTGCATTATATGGGATGTTAACAAAGGTAGCAATCTTCAGACATTGGATGCTCACGCCCATTATGTTCAAGGAGTTGCATGGGACCCTCTAGGGAAATATATTGCCTCTCTTAGTTCTGACAGGACTTGCCGAATATACATGAATAGGCCTAAAAAATCTAAGGGAAGTGAGAGAATCAATTATGTTTGCCAGCAAATTATTTCGAAGGCAGAATATCCGTTACTGGAAAATTCTAAGTCAATCAATTATCATCTTTTCCATGATGAGACACTGCCATCTTTCTTCAGAAGACTAGCCTGGTCTCCTGATGGCTCATTTCTACTTGTGCCTGCAGGCTCATACAGAAATACTTCTGGATCTGAATCTATAAATGCAGCTTACATATTTTCTAGAAAAGATTTCTCTCGGCCTGCCATACAGCTTCCTTGCGCGAGCAAAGCTGTGGTTGCTGTGCGGTTCTGCCCCATTAATTTTAGCCTTCGGGGAATAAACTCAGCTGGGTTATTTAAGCTCCCTTATCGCATCATTTTTGCTGTGGCCACTTTGAATTCGTTATACATTTATGACACTGAGAACAACCCTCCAATAGCTATAATGGCTGGTCTTCACTATGCGTCAATAACAGACATCGCATGGTCACCTGATGCCCATTATTTGGCATTGTCCTCTCAAGATGGTTACTGCACTTTGGTGGAATTTGAAAGTAACGAACTAGGATCACCCATCTCTCTATCAGGTGAAAAGAAAGTCTCCAACACGGATGGTAAGAAATCATTGCAGACAGCTGATGGTATGGTCATTGAAGCAAGTAGGAATGTTGGCTCAGTTGAAGCAGAAAGCAGCAAAACTGAAACAGAAGCAAAGGTTGATGACGTGGTCACTGAGGGAACTAGCAATGTTGATGTAGCTGTAGCAGAAAGCAGGAAAACTGAAGCAGAAGAGAAGGGTGACGACATGGTCATTGAGGAGCCTAGCAACTGTGGTAAAGTTATTGCAGAAAGCAAGAAAATAGAAGCAGAAGAGAAGGATGACATGGTAATTGACGCAACTGGGAATGTTGGTGCAGTTGTAACAGATAGCAGTAAAAATGAAGCAGAAGATAAAGCAGAGAAGCAGCCACTGAGTTCAGATACCATGAAATCTGAAGCAAAAGAGATGGCTGAGAATCAACCTTCTAGTCTGGTTAATGTAAGAAAAGAAGCAGAAGAGAGGACAGAGAAACCTCGATCAAGTTCCGACGGTATAAAATCAGAAGCAGAGGCAGAGAAACAGACGTCTAGTTTGGATAATTTGAAGAGAGAAGCAGAAGAAAATGCATGTAGTTCAAAGGGAATGCCCATGTCAAATAAGCAAGGCAAGAAGCGTATAACTCCTATTGCAATCGATCCTTGA 1797 0.4274 MKGGTVQINWHETKPVLTLDFHPLSATLATGGADFDIKLWSINSAEAQKKLPVVTYLNSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHPTDTGQTWKVLKMLRSHHKDVLDLQWSPDAAFIISGSVDNSCIIWDVNKGSNLQTLDAHAHYVQGVAWDPLGKYIASLSSDRTCRIYMNRPKKSKGSERINYVCQQIISKAEYPLLENSKSINYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYRNTSGSESINAAYIFSRKDFSRPAIQLPCASKAVVAVRFCPINFSLRGINSAGLFKLPYRIIFAVATLNSLYIYDTENNPPIAIMAGLHYASITDIAWSPDAHYLALSSQDGYCTLVEFESNELGSPISLSGEKKVSNTDGKKSLQTADGMVIEASRNVGSVEAESSKTETEAKVDDVVTEGTSNVDVAVAESRKTEAEEKGDDMVIEEPSNCGKVIAESKKIEAEEKDDMVIDATGNVGAVVTDSSKNEAEDKAEKQPLSSDTMKSEAKEMAENQPSSLVNVRKEAEERTEKPRSSSDGIKSEAEAEKQTSSLDNLKREAEENACSSKGMPMSNKQGKKRITPIAIDP 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Bisa08g2455 598 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Bisa08g2455 598 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Bisa08g2455 598 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Bisa08g2455 598 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Bisa08g2455 598 Pfam WD domain, G-beta repeat 338 363 IPR001680 GO:0005515
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Bisa08g2455 598 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Bisa08g2455 598 Gene3D - 4 206 IPR015943 GO:0005515
Bisa08g2455 598 SMART WD40_4 3 41 IPR001680 GO:0005515
Bisa08g2455 598 SMART WD40_4 327 367 IPR001680 GO:0005515
Bisa08g2455 598 SMART WD40_4 101 140 IPR001680 GO:0005515
Bisa08g2455 598 SMART WD40_4 53 92 IPR001680 GO:0005515
Bisa08g2455 598 SMART WD40_4 143 182 IPR001680 GO:0005515
Bisa08g2455 598 Coils Coil 553 573 - -
Bisa08g2455 598 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Bisa08g2455 598 SUPERFAMILY WD40 repeat-like 13 394 IPR036322 GO:0005515
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Bisa08g2455 598 MobiDBLite consensus disorder prediction 532 574 - -
Bisa08g2455 598 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Bisa08g2455 598 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Bisa08g2455 598 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Bisa08g2455 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Bisa08g2455 598 MobiDBLite consensus disorder prediction 496 519 - -
Bisa08g2455 598 Gene3D - 227 399 IPR015943 GO:0005515
Bisa08g2455 598 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 598 IPR045145 GO:0006335
Bisa08g2455 598 MobiDBLite consensus disorder prediction 475 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2455 Bisa-ChrBisa08 58236452 58241719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2455 25 181 Miscellaneous Gene Families AT5G08390 29.299 2.12e-16 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2455 08 58236452 58241719 Bisa08g2455 08 58236452 58241719 ECH