Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2291 ATGGATAATAATCTTGATGAGCAGAACAAGCTCCCGGAGCTCAAATTAGATGCTAAGCAAGCCCAAGGGTTTCTATCCTTTTTCAAAACCCTGCCTCATGACTCAAGGGCAATTCGGTTGTTTGATCGTCGGGACTACTACACTGCACATGGTGAGAATGCAACTTTCATTGCTAAGACCTACTACCATACTACTACGGCATTAAGACAACTTGGTAGTGGATCTGATGCTGTTTCCAGTGTAAGTGTCAGTAGGAACATGTTTGAAACAATTGCGCGGGATGTACTCCTGGAGAGAACAGACCATACTCTTGAGCTCTATGAGGGTAGTGGCTCTAAGTGGAGACTGATCAAAAGTGGAACACCCGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCCCCTGTTGTTGTTGCACTATCACCTAACATCCGAGAAAATGGGTGCACTATTGGGCTGGGATTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAATTTCTTGATGATAGTCATTTTACAAATGTGGAGTCAGCATTGGTTGCTCTTGGTTGCAAGGAATGTCTTCTGCCTGTGGAGAGTAGCAAGTCTACTGAAAATAGGATGTTGTGTGATGCATTGACCAAGTGTGGTGTGATGTTAACAGAAAGAAAGAAATCTGAGTATAAAACCAGGGATCTGGTACAGGATCTTGGCAGGCTTGTTAAAGGTTCAATTGAACCAGTTCGTGATTTGGTGTCTGGGTTTGAATTTGCACCTGGTGCTTTGGGAGCATTACTATCTTATGCAGAGTTACTTGCAGATGAAAGCAATTATGGAAATTATACTCTTCAAAGGTACAATCTTGAGAGCTACATGAGGTTAGATTCTGCTGCCATGAGGGCACTTAATGTCCTGGAGAGCAAGACTGATGCAAACAAAAATTTCAGTTTATTTGGTCTCATGAATAGGACCTGCACAGCTGGAATGGGGAAACGGTTATTGCACATGTGGCTAAAACAGCCCTTATTAGATGTGGAAGAAATTAATTCCAGACTGGATGTAGTTCAGGCATTTGTAGAGGATACTGTGCTACATCAGGATCTGAGGCAACATCTGAAAAGAATATCAGACATTGAGCGACTGGTGCGCAATCTTCAAAAGCAAAGGGCTGGTCTGCAACATATTGTAAAACTTTATCAGTCTTGTATTAGACTACCTTACATAAAAAGTGCACTGGAAAGATATGATGGACAGTTTTCCTCAATGATGAAGGAAAGGTATTTAGAACCTCTTGAGTTATGGACTGATGATGAACACTTAAACAAATTCATTGGTCTCGTAGAAGCTTCTGTTGACCTTGATCAACTCGAGAATGGGGAATACATGATTTCTTCAAGTTATGACTCTACACTAACTAAACTGAAGGAGCAGCAAGAGTTACTAGAGAGCCAAATACACAATTTGCACAGACAAACTGCTAATGATCTTGACCTGCCTATAGATAAGGCACTAAAGTTAGACAAGGGCACACAATTTGGACATGTTTTCAGAATTACAAAGAAGGAAGAGCCGAAAATAAGGAAGAAGCTCAGTACTCAGTTTATTGTATTGGAGACCAGGAAAGATGGAGTGAAGTTTACAAACACAAAGCTTAAAAAACTAGGGGATCAGTATCAAAAGATACTTGAGGAATACAAGGACTGTCAAAAAGAGTTGGTGACTAGAGTAGTTCAAACTGCAGCCACTTTCTCTGAGGTGTTTGAATCTTTGGCTGGAATACTTTCTGAATTGGATGTCTTACAAAGCTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCTTACATAAGGCCTGACATCACTTCATCGGATGAAGGAGATATTATATTAGAAGGAAGTAGACACCCTTGTGTCGAGGCTCAAGAATGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGGGGAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCGACATTTATCCGACAGGTGGGTGTGAATATTTTAATGGCACAAGTTGGTTCTTTTGTTCCTTGTGACAAGGCCAGCATATCCATCCGTGATTGCATTTTTGCTCGTGTTGGTGCAGGTGACTGCCAACTTCGAGGCGTTTCTACATTTATGCAAGAGATGCTTGAAACTGCATCAATATTAAAAGGAGCTACAGACAAGTCCTTGATAATCATTGATGAGTTGGGACGTGGAACATCAACTTATGATGGATTTGGTCTAGCCTGGGCCATTTGTGAGCACATTGTTGAACAGATTAAAGCACCTACTTTGTTTGCCACCCACTTTCATGAACTGACTGCGTTAGCCCTTGAAAATGTAAAAGATGATCCTCAGAAACAAACTGTTGGTGTTGCAAACTATCATGTTAGTGCACATATTGACTCATCAACTCGCAAGCTGACTATGTTATACAAGGTTGAACCAGGAGCTTGTGATCAAAGTTTTGGTATTCACGTTGCTGAATTTGCAAATTTCCCAGAAAGTGTTGTTGCCCTGGCTAGAGAAAAAGCAGCAGAACTGGAAGATTTTTCTCCATCTGCAATATACTTAACTGATGCTACAAAGGAGGTGGGATCTAAACGAAAGAGAGAGTTTGAAATTGATGAGGTCTCTAAAGGAGCTGCAAGGGCTCGTCAATTTCTTGAAGCATTTGCTGATTTGCCATTGGAAACTATGGATAAAATGCAAGCTTTGCAAGAAATAAGGAAGTTAAAGGATGATTTAGAGAATGATGCAAAAAGCTGTTGCTGGCTGCAGCAATTTTTGTAGTTCTTCGAAAAAAGCATGACTAGCGAAACCCTTTTTGTTGCTCATGGTTATCTCAACATTCTTTGCCCTCTAAGACTCTGGGCAGTTGAAATAACAGAAGAGTTTCAGAGTCACAGAGAGAGAGAGAGAGAGAGAGAAATAATGAGAGAGGTTATTGCGATATCTTTCCTCCTTCAAATGGCGCCCACTGAAACTGTAGCCTTCGTTTCTCCTATTGCGAAGTAG 3051 0.4074 MDNNLDEQNKLPELKLDAKQAQGFLSFFKTLPHDSRAIRLFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSDAVSSVSVSRNMFETIARDVLLERTDHTLELYEGSGSKWRLIKSGTPGNIGSFEDVLFANSEMQDSPVVVALSPNIRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLLPVESSKSTENRMLCDALTKCGVMLTERKKSEYKTRDLVQDLGRLVKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYTLQRYNLESYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINSRLDVVQAFVEDTVLHQDLRQHLKRISDIERLVRNLQKQRAGLQHIVKLYQSCIRLPYIKSALERYDGQFSSMMKERYLEPLELWTDDEHLNKFIGLVEASVDLDQLENGEYMISSSYDSTLTKLKEQQELLESQIHNLHRQTANDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLSTQFIVLETRKDGVKFTNTKLKKLGDQYQKILEEYKDCQKELVTRVVQTAATFSEVFESLAGILSELDVLQSFADLASSCPTPYIRPDITSSDEGDIILEGSRHPCVEAQEWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEQIKAPTLFATHFHELTALALENVKDDPQKQTVGVANYHVSAHIDSSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSAIYLTDATKEVGSKRKREFEIDEVSKGAARARQFLEAFADLPLETMDKMQALQEIRKLKDDLENDAKSCCWLQQFLXFFEKSMTSETLFVAHGYLNILCPLRLWAVEITEEFQSHREREREREIMREVIAISFLLQMAPTETVAFVSPIAK 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2291 1016 Coils Coil 553 573 - -
Bisa08g2291 1016 FunFam DNA mismatch repair protein 294 511 - -
Bisa08g2291 1016 Pfam MutS domain V 662 860 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 861 IPR027417 -
Bisa08g2291 1016 SMART mutATP5 659 857 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 FunFam DNA mismatch repair protein 122 291 - -
Bisa08g2291 1016 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Bisa08g2291 1016 Gene3D - 617 939 IPR027417 -
Bisa08g2291 1016 CDD ABC_MSH2_euk 630 860 IPR032642 GO:0005524
Bisa08g2291 1016 Coils Coil 913 933 - -
Bisa08g2291 1016 Pfam MutS family domain IV 469 566 IPR007861 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Coils Coil 370 397 - -
Bisa08g2291 1016 PIRSF MSH2 6 943 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Pfam MutS domain III 300 606 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Pfam MutS domain II 143 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 FunFam DNA mismatch repair protein MSH2 513 616 - -
Bisa08g2291 1016 Coils Coil 473 493 - -
Bisa08g2291 1016 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 FunFam DNA mismatch repair protein 7 121 - -
Bisa08g2291 1016 FunFam DNA mismatch repair protein MSH2 617 937 - -
Bisa08g2291 1016 SMART DNAend 314 642 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bisa08g2291 1016 Gene3D - 524 616 - -
Bisa08g2291 1016 Gene3D - 294 523 - -
Bisa08g2291 1016 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 81 861 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2291 Bisa-ChrBisa08 54505410 54521733 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2291 08 54505410 54521733 Bisa08g2291 08 54505410 54521733 ECH