Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1002 ATGTTAATAACATTCGGTTACTCATCCACTGAGCCACCGTCTTCTCGTGCTACACTGCAATCAACAATACCAGGACCAACAACATTACCAGTCACAGCTTCAGCCGTGAGCAAAGTGCAAACCACCTTACGTCACTCTCACTCCTCAACTTTACTCCACTTCCTGCCTGATTCCACAAGGCCAGTGACTCAGGTGTTATTATATCTCTGTGGTGTCCCAATATTCTTTGATACCAATTCTAGTGCGAACTGTAAAATAATGTGTTTGTATGTCGTCAGATCTCTCTATTTCTTCAAGATGGCCACTGGACAACTATTCTCCCGCACTACACAAGCATTGTTTTACAACTACAAGCAACTTCCTATTCAGCGGATGCTAGATTTTGACTTCCTTTGTGGTAGGGAAACACCATCGGTGGCTGGAATCATTAATCCTGGTTCTGAGGGATTTCAGAAGCTTTTTTTCGGTCAGGAGGAAATTGCCATCCCAGTGCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCCACTGCTGATGTCTTCGTCAATTTTGCATCATTTAGAAGTGCAGCTGCTTCATCCATGGCCGCTTTGAAGCAACAAACAATTAGAGTTGTTGCTATTATTGCTGAAGGCGTACCTGAATCAGACACCAAGCAATTGATTGCATATGCCCGGTCAAACAATAAGGTTGTTATTGGCCCAGCTACTGTTGGGGGCATTCAAGCTGGTGCTTTTAAGATAGGTGACACGGCTGGAACAATAGACAATATAGTTCGATGCAAGCTGTACAGGCCTGGATCTGTTGGCTTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATATAACACTATTGCTCGTGTGACAGATGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTTCCAGGTTCCACACTTTCTGATCATATTTTGCGGTATAACAATATACCACAGGTTAAAATGATGGTAGTACTTGGGGAACTCGGTGGGCATGATGAGTATTCCCTAGTGGAAGCCCTAAAACAAGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTTAGTGGGACCTGTGCACAACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCTAAAAGTGGTGGCGAGATGGAGTCTGCTCAAGCAAAGAATCAAGCACTAAGAGATGCTGGAGCTATTGTTCCCACTTCATATGAAGCTTTTGAAGCTGCAATTAAGGAAACATTTGACAAATTGGTTGAAGGAGGGAAAATCACACCAGTGAAGGAGTTTAGTCCTCCACAGATTCCTGAGGACCTGACATCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCTCTGATGACAGAGGTGAAGAGCCATCCTATGCTGGTGTTCCCATGTCTAACATTATTGAAAAGGGTTTGGGTGTGGGTGATGTTATATCTCTATTGTGGTTCAAACGCAGCCTTCCCCGTTACTGCACACAATTTATTGAGATATGCATCATGCTATGCGCTGACCATGGTCCTTGTGTTTCTGGTGCTCACAACACCATAGTGACAGCAAGGGCTGGGAAGGACCTTGTTTCCAGCCTTGTATCAGGTTTGCTTACAATCGGTCCTCGATTTGGGGGTGCTATTGATGATGCTGCTCGTTACTTCAAGGATGCTTATGACAGGAATCTTACACCTTATGAGTTTGTTGAGGGCATGAAGAAGAAGGGCATCCGTGTGCCGGGAATAGGGCACAGGATCAAGAGTAGAGACAACAGAGATAAGAGAGTAGAGTTGCTACAGAAGTTTGCAAGAACATATTTTCCTTCTGTAAAATACATGGAATATGCCGTCGAGGTTGAAACCTATACCCTCTCAAAGGCAAATAACCTGGTTCTCAACGTAGATGGTGCCATTGGGTCCCTTTTCTTAGATCTTCTAGCTGGCAGTGGAATGTTTACCAAGCCAGAAATTGATGAAATCATCGAGATTGGATATCTGAATGGGCTATTTGTGCTGGCTCGCTCCATTGGCCTGATTGGGCATACCTTTGACCAAAAGAGATTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 2124 0.4411 MLITFGYSSTEPPSSRATLQSTIPGPTTLPVTASAVSKVQTTLRHSHSSTLLHFLPDSTRPVTQVLLYLCGVPIFFDTNSSANCKIMCLYVVRSLYFFKMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFVNFASFRSAAASSMAALKQQTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIVRCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRYNNIPQVKMMVVLGELGGHDEYSLVEALKQGKVTKPVVAWVSGTCAQLFKSEVQFGHAGAKSGGEMESAQAKNQALRDAGAIVPTSYEAFEAAIKETFDKLVEGGKITPVKEFSPPQIPEDLTSAIKSGKVRAPTHIISTISDDRGEEPSYAGVPMSNIIEKGLGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKFARTYFPSVKYMEYAVEVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKPEIDEIIEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1002 707 CDD CCL_ACL-C 468 705 - -
Bisa08g1002 707 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 273 302 IPR033847 -
Bisa08g1002 707 SUPERFAMILY Citrate synthase 229 703 IPR036969 GO:0046912
Bisa08g1002 707 Gene3D - 101 236 - -
Bisa08g1002 707 PANTHER ATP-CITRATE SYNTHASE 102 706 IPR002020 GO:0006099|GO:0046912
Bisa08g1002 707 FunFam ATP-citrate synthase beta chain protein 101 236 - -
Bisa08g1002 707 Gene3D - 237 422 IPR016102 -
Bisa08g1002 707 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 358 374 IPR017440 -
Bisa08g1002 707 Gene3D - 549 646 IPR016143 -
Bisa08g1002 707 Pfam CoA-ligase 272 397 IPR005811 GO:0003824
Bisa08g1002 707 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 292 IPR017866 -
Bisa08g1002 707 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 107 235 IPR036291 -
Bisa08g1002 707 Pfam Citrate synthase, C-terminal domain 498 697 IPR002020 GO:0006099|GO:0046912
Bisa08g1002 707 FunFam ATP-citrate synthase subunit 1 554 647 - -
Bisa08g1002 707 FunFam ATP-citrate synthase subunit 237 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1002 Bisa-ChrBisa08 18081642 18087971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1002 100 707 Acyl Lipid Metabolism Gene Families AT3G06650 92.928 0.0 1140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1002 08 18081642 18087971 Bisa08g1002 08 18081642 18087971 ECH