LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g0955	ATGACCTTTGCGGTTCTGTTCGTTACGGCCACGAAGCTCGCCGGAGCACTCGTCACGCTCACCATCGCCGCTAATGCCTTCTCATTCTCCCGTTTCCGCAGAAAGAATCTCCGCCCGTTCCGCTCTCCTATCGATGAGTCCTCCGACGTGCTCGCCGATTTCGATGTTAACGAAGGGGAAAATAGGTTTTTCTTTGGCCTGGCTACAGCACCAGCACATGTTGAGGACAGGCTTAATGATGCTTGGATCCAGTTTGCAGAAGAAGAAAAGCCATACGATGACTCACAAGAGATCAAACAACCAGCTGATGCTGTGGTTGGCTCTGCTGCTGGTAATGGTGGATCTCAACAAGCTGCATCAGCACGACAACATGATGATAAAAAGCGTAAAAAGAGTAAAAAGCCTCTAAAGATTGCCATGGAGGCCATGATTAGGGGATTTGAGAAGTATGCAGAAGAAGACACAGCAGCACCACCAGCTGACGTGCCAAAAGAGGAGCACCATTATAAAGTTACTGCTTGGCATAATGTTCCACACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAAGGTACTGGTGTTACTGTCTTTCGCATGGGTATAGATTGGTCAAGAATCATGCCAGAGGAGCCAATAAATGGGCTTAAAGAATCTGTTAATTATGCTGCTTTGGAGCGTTATAGGTGGATTATCAACAGGGTTCGGTCATATGGAATGAAGGTCATGCTTACTCTTTTTCATCACTCATTGCCACCATGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACTGTTGATTATTTCATGGACTTTACCAGGCTTGTTGTAAACAGTGTTTCTGATCTAGTAGAATATTGGATTACATTTAATGAACCTCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCCGGTGGTCATCCTGATATGCTGGAGGTTGCTACTTCTGCTCTTCCAACTGGTGTTTTCCAGCAGGCCATGCATTGGATGACTATTGCACACTCAAAAGCATATGATTATATCCATGAACAGAGTAACTTGTTAAAACCCACTGTTGGTGTAGCACACCATGTGTCATTCATGCGACCTTATGGTCTGTTTGATGTGGCTGCTGTTTCACTGGCTAATTCCTTGACTGTCTTTCCATACATCGATAGTATTTCTGACAAGCTGGATTTCATTGGCATAAACTACTATGGGCAGGAAGTGGTTTCCGGTGCTGGACTGAAACTTGTGGAAACAGATGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCTTATACCGCATGCTGCTTCAGTTTCATGAAAGATACAAACATCTAAAAGTTCCCTTTATCATTACTGAAAATGGGGTATCTGATGAGACAGATTTAATCCGTCGACCATATCTAGTGGAACATTTGCTTGCTGTATATGCAGCCATAATCATGGGTGTGCCTGTGCTTGGTTATCTGTTTTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGGCTGGTAGCAGTTGACCGGGCAAACAATCTTGCACGGATCCCACGTCCTTCTTACCACCTATTTTCTAAAATTGTTAACACGGCTAAAGTTACACGTGAAGACCGTGAAGGAGCATGGCATGAACTCCAGAGAGCTGCCAACGAGAAGATAACAAGACCATTTTATCGAGCTGTAGACAAGCATGGTTTGATGTATGCAGGTGGACTCGAAGAACCTATACAGCGACCTTATATAAAGCGAGATTGGCGGTTTGGTCACTATCAGATGGAGGGTTTACAGGATCCTTTAAGTCGCTTCTCGAGATTCATTATCCCACCATTCTTCCTGAAAAGGAAAAGGGAACCTCAAAAGAAGAAGAGAGCCCCGTTACTTCTTCAAGCCTCTTGA	1938	0.4489	MTFAVLFVTATKLAGALVTLTIAANAFSFSRFRRKNLRPFRSPIDESSDVLADFDVNEGENRFFFGLATAPAHVEDRLNDAWIQFAEEEKPYDDSQEIKQPADAVVGSAAGNGGSQQAASARQHDDKKRKKSKKPLKIAMEAMIRGFEKYAEEDTAAPPADVPKEEHHYKVTAWHNVPHPEERLRFWSDPDTELKLAKGTGVTVFRMGIDWSRIMPEEPINGLKESVNYAALERYRWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVNSVSDLVEYWITFNEPHVFCMLTYCAGAWPGGHPDMLEVATSALPTGVFQQAMHWMTIAHSKAYDYIHEQSNLLKPTVGVAHHVSFMRPYGLFDVAAVSLANSLTVFPYIDSISDKLDFIGINYYGQEVVSGAGLKLVETDEYSESGRGVYPDGLYRMLLQFHERYKHLKVPFIITENGVSDETDLIRRPYLVEHLLAVYAAIIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTAKVTREDREGAWHELQRAANEKITRPFYRAVDKHGLMYAGGLEEPIQRPYIKRDWRFGHYQMEGLQDPLSRFSRFIIPPFFLKRKREPQKKKRAPLLLQAS	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g0955	645	MobiDBLite	consensus disorder prediction	106	135	-	-
	Bisa08g0955	645	Gene3D	Glycosidases	147	555	-	-
	Bisa08g0955	645	PANTHER	GLYCOSYL HYDROLASE	161	390	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	Pfam	Glycosyl hydrolase family 1	396	545	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	Pfam	Glycosyl hydrolase family 1	191	376	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	PRINTS	Glycosyl hydrolase family 1 signature	401	415	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	PRINTS	Glycosyl hydrolase family 1 signature	458	466	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	PRINTS	Glycosyl hydrolase family 1 signature	515	527	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	PRINTS	Glycosyl hydrolase family 1 signature	491	508	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	PRINTS	Glycosyl hydrolase family 1 signature	470	481	IPR001360	GO:0004553\|GO:0005975
	Bisa08g0955	645	SUPERFAMILY	(Trans)glycosidases	164	548	IPR017853	-
	Bisa08g0955	645	ProSitePatterns	Glycosyl hydrolases family 1 active site.	458	466	IPR018120	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g0955	Bisa-ChrBisa08	17493790	17501483	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g0955	6	621	Glycoside Hydrolase	AT3G06510	62.634	0.0	844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa08g0955	08	17493790	17501483	Bisa08g0955	08	17493790	17501483	ECH