Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0181 ATGAATTTCAAAGATTCCACCTCCGCCTCAAACTCGTGCCTCCTCCTTCTCCCATCAACTCTTGCTCTCTTCTTCTCGATTCACGCCTCTCTGTCTCTCTTTCCGGCCATGGATCCCGTTTCGGTTTGGGGAAACACGCCTCTGAAGGCTGTGGACCCAGAAATCCACGATCTGATTGAGAAGGAAAAGCGCCGGCAATGCCGCGGCATCGAGCTCATTGCGTCGGAAAACTTCACTTCCTTCGCCGTCATCGAGGCCCTCGGTAGTGCCTTGACCAACAAGTACTCCGAAGGCATGCCTGGAAACCGTTACTACGGTGGCAACGAGTACATCGACGAAATCGAGAACCTCTGCAGGTCCCGTGCTCTTCAGGCCTTCCACCTCGATCCCACCAAGTGGGGCGTCAATGTTCAGCCTTACTCCGGTTCGCCCGCCAATTTCGCTGCCTACACGGCCGTGCTTCAGCCCCATGACCGCATCATGGGGTTGGATCTGCCCTCTGGTGGCCATTTGACTCATGGCTACTACACCGCTGGAGGGAAGAAGATCTCTGCGACCTCGATTTATTTCGAGAGTTTGCCATACAAGGTGAATTTCACTACTGGCTACATTGACTATGATAAGCTGGAGGAGAAGGCCTTGGATTTCAGGCCTAAGTTGATCATTTGTGGTGGAAGTGCATACCCCAGGGACTGGGACTATGCACGGTTCCGACAGATTGCGGACAAGTGTGGTGCACTCTTACTCTGTGATATGGCTCACATCAGTGGTCTTGTTGCTGCTCAGGAAGCTGCTAATCCCTTTGAGTATTGTGACCTGGTCACAACCACAACCCATAAGAGCTTGAGGGGTCCTAGGGCAGGTATGATCTTCTACCGGAAAGGACCTAAACCACCCAAGAAGGGCCAGCCTGAGGATGCAGTTTATGACTTTGAAGACAAAATCAATTTTGCTGTCTTCCCCTCCCTTCAGGGAGGTCCTCATAATCACCAGATTGGTGCCCTTGCCGTTGCCTTAAAACAGGCGATGTTGCCTGGGTTCAAGGCCTATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCCTAGGAAATTTCTTGATAAGCAAGGGTTACAAGCTTGTCACCGGAGGAACAGAGAATCATCTCGTCTTGTGGGATCTCCGACCTCTGGGTTTGACTGGCAACAAGGTGGAGAAACTTTGTGACCTTTGTAACATTACCGTTAACAAAAATGCTGTTTTTGGCGATAGCAGTGCTTTGGCTCCTGGAGGAGTACGCATTGGTGCTCCAGCCATGACATCGAGAGGGTTGGTTGAGAAGGACTTCGAGCAGATTGGAGAGTTCCTTCACCGCGCAGTGACTTTAACATTGGAGATCCAGAAGCAGCATGGCAAGCTTTTGAAAGACTTCAACAAGGGGTTGGTGGACAACAAGGATATTGCAGCCCTCAAGGCTGACGTGGAGAAGTTTTCGGCCTCATTTGATATGCCCGGCTTCCTGGTATCCGAGATGAAGTACCAGGATTAG 1524 0.5125 MNFKDSTSASNSCLLLLPSTLALFFSIHASLSLFPAMDPVSVWGNTPLKAVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEYIDEIENLCRSRALQAFHLDPTKWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRQIADKCGALLLCDMAHISGLVAAQEAANPFEYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMLPGFKAYAKQVKANAVALGNFLISKGYKLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKQHGKLLKDFNKGLVDNKDIAALKADVEKFSASFDMPGFLVSEMKYQD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0181 507 PIRSF SHMT 28 502 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bisa08g0181 507 Gene3D - 77 352 IPR015421 GO:0003824
Bisa08g0181 507 Gene3D Aspartate Aminotransferase, domain 1 52 496 IPR015422 GO:0003824
Bisa08g0181 507 Hamap Serine hydroxymethyltransferase [glyA]. 47 497 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bisa08g0181 507 SUPERFAMILY PLP-dependent transferases 39 499 IPR015424 -
Bisa08g0181 507 CDD SHMT 51 489 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bisa08g0181 507 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 272 288 IPR019798 GO:0030170
Bisa08g0181 507 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 45 499 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bisa08g0181 507 FunFam Serine hydroxymethyltransferase 347 496 - -
Bisa08g0181 507 FunFam Serine hydroxymethyltransferase 77 352 - -
Bisa08g0181 507 Pfam Serine hydroxymethyltransferase 48 447 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0181 Bisa-ChrBisa08 2856587 2859974 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g0181 08 2856587 2859974 Bisa08g0181 08 2856587 2859974 ECH