Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa07g1630 ATGAAGATCATTAGTAACCGTCTGATTTCTGGCGGAGGGTGGTTACTCAGGCAGATGTGTACGGCGGCGACGAAGCTAGCGGAAGGGGAAGCCCAGCACTCAGGGAATAAGTTAGGCCTTTATCAAAGGTTATCGGCGCTGCAAATGACAGGAGGGAGCGTGTCGCAGACGTTAAACCAGTATGTTATGGAGGGCAAAGCCATCCGGAAAGACAATCTCCAACGGTGCGTCCGGGAGCTTAGAAAATATCGTAAATTCCAGCACGCACTCGAGATAATGGAATGGATGGAATTTAGGGGAATCAACTACTCCTTCGCTGACTTTGCAGTATATTTAGATCTCATATCCTTAACCAAAGGGGTGGTAGCAGCTGAGAACTATTTCAGTGGTCTTCCTCCTGAAGCTAAGAATAAAATAACATATGGAGCGCTTCTGAATTGTTATTGCAGGGGCTTAATGGCAGACAAGGCATTGGGTCTTTTTGAAAAGATGAATGAACTTAATTATGTTACTAATCTGGCCTTCAACAATCTCATGTCTCTATATATGAGACTAGGCGAACATCAGAAGGTGCCTCCGCTGATAGATGATCTGAAGCAGAGGAAAATTCCTATGTCTTCTTTTACATATCATGTCTGGATGAATAGCTATGCCTGTTCAAATGATATTGAGGGAGTAGAAAGAGTCTATGAGGAGATGAAAAAAGAAGATGGAGACAAAATCAATTGGCAGACTTATAGCAACCTTGCTGCTATTTATGTGAAGACCAAACGTTTTGAGAAAGCTGAATTGATGCTTAAGATGGTAAGAAAGATGATGAAACCCTGGCAGCGCGAAGCTTACCATTGCTTACTTAGCCTTTATGCAGGGACTTCTAATCTATGTGAAGTTTATAGTGTATGGAATACCCTCAAGTCAGTCTCTCCAGTGACCAATACAAGCTATCTTGCGATGTTTCAAACCCTTTGCAGGCTTAATGATGTTCACGGTTTAACAAAATGTTACAAGGAGTGGGAATCTAATTGTACGAATTTTGATCTAAGGTTAGTCAAGACTGTGATAAGTGCCTACTTGAGTCATGGCCTGTGTGAAAAAGCTGAATTGGTGTTTGAAAATGCCATCAAGAGGTGGAGCAAAGGACCTTTCTATAAGATACACGAAATGTTCATACTCTTCTTCTTGGAGAATCGCAAGGAAGACCTTGCTGTGTGTCACCTTGAGGCAGCCATCTCAGAAGTCAAGGATGATGGATGGAATCCTTCACCAGAAGTTGTAAGAGCATTTTTAAAATATTATGAGAAAGAGAAGGTTGATGGGGTTGAGAAGCTTCGGAAGATTTTCAAGACTTGCAATTTCGATGATAGTGTTGTCCTTGGCCCTTTTCTTACCCAAACAGAAAATGTTTAG 1407 0.4186 MKIISNRLISGGGWLLRQMCTAATKLAEGEAQHSGNKLGLYQRLSALQMTGGSVSQTLNQYVMEGKAIRKDNLQRCVRELRKYRKFQHALEIMEWMEFRGINYSFADFAVYLDLISLTKGVVAAENYFSGLPPEAKNKITYGALLNCYCRGLMADKALGLFEKMNELNYVTNLAFNNLMSLYMRLGEHQKVPPLIDDLKQRKIPMSSFTYHVWMNSYACSNDIEGVERVYEEMKKEDGDKINWQTYSNLAAIYVKTKRFEKAELMLKMVRKMMKPWQREAYHCLLSLYAGTSNLCEVYSVWNTLKSVSPVTNTSYLAMFQTLCRLNDVHGLTKCYKEWESNCTNFDLRLVKTVISAYLSHGLCEKAELVFENAIKRWSKGPFYKIHEMFILFFLENRKEDLAVCHLEAAISEVKDDGWNPSPEVVRAFLKYYEKEKVDGVEKLRKIFKTCNFDDSVVLGPFLTQTENV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa07g1630 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Bisa07g1630 468 SUPERFAMILY TPR-like 204 301 IPR011990 GO:0005515
Bisa07g1630 468 NCBIfam pentatricopeptide repeat 139 169 IPR002885 -
Bisa07g1630 468 NCBIfam pentatricopeptide repeat 208 236 IPR002885 -
Bisa07g1630 468 PANTHER OS12G0527900 PROTEIN 36 453 - -
Bisa07g1630 468 FunFam Pentatricopeptide repeat-containing protein mitochondrial 70 279 - -
Bisa07g1630 468 Pfam PPR repeat 352 371 IPR002885 -
Bisa07g1630 468 Pfam PPR repeat 139 168 IPR002885 -
Bisa07g1630 468 Pfam PPR repeat 208 236 IPR002885 -
Bisa07g1630 468 Pfam PPR repeat 245 271 IPR002885 -
Bisa07g1630 468 Gene3D Tetratricopeptide repeat domain 33 197 IPR011990 GO:0005515
Bisa07g1630 468 Gene3D Tetratricopeptide repeat domain 198 310 IPR011990 GO:0005515
Bisa07g1630 468 Gene3D Tetratricopeptide repeat domain 311 457 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa07g1630 Bisa-ChrBisa07 41688485 41690389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa07g1630 39 435 EF-hand Containing Proteins AT1G02150 33.416 1.21e-69 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g1630 07 41688485 41690389 Bisa03g2112 03 30211444 30212472 CCT
Bisa07g1630 07 41688485 41690389 Bisa07g1630 07 41688485 41690389 ECH