Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g2234 ATGAATTTTTTCAAAGTGAAGAAGTTCAGAAAACCTCAGAAGGCAGACGGAGGAAACTATATGTTGGAGAAGGCAGTGCCGGAGCCTGAGGAAGCAAGGCCTGAGAATGGTGGTGATGATCAGTGTAAATCAGCCAATTCAGATCCTGCAGCAGAAGCTGAGGACGATGACGATGATTTTATTACCAATGAGGTGAAGAGGAGGCTGAAAGAACTGAGAAGAAACAGTTTTATGGTGTTGATTCCCGAAGAAGAATCATGCCAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGCGGGAGAGAAAAGGCCTGAAGAATGGAGGGACGTGGAAGCAGAAGGCCAGCAATGGTGGCGTGGCTTTGATGCGTTGTTTGAAAAGTACTGTGAAAGAATGCTCTTCTTTGATCGCATGAGCACACAGCAGCTTAATGAAGTTGGCAAAGGCTCCCAGTACCCTTCAACTCCAAGATCTGCGTCAAAGAAGCTGGCATCCCCCTTTCGTTGTCTTTCTCTGAAACATTTTGAAGAACCTGATGATGAAACTGAACATCTTCAACAGCCTCAAAATGATCCCTACCAAGATATTGAAACAGCGTACGTTGGTCAGATATGCTTGACATGGGAGGCACTTCACTGTCAGTACACTCAAATGTGCCAGAAGATGTCTTGGCAACCCGAAAGTCCTACATGTTACAACCACACTGCACAGCAGTTTCAACAGTTTCAGGTTCTACTACAAAGGTTTATTGAGAATGAGCCTTTTGAGAAGGGCCTTAGAGCTGAAATTTATGCTCGCACAAGGAACACCTTGCCTAAACTGCTTCAGGTTCCTAATATTCAAGGTTCAGATCAACAATCAACAGGAGATGATTCAGAGATGAGAGTTCTTGGTCCTGATCTTAACAGGATAATAGAGAACTCCATCCTTACATTCCATATTTTCCTGAAAAGGGACAAGAAAAAGTCAAGCGGAGTTATTAATCCGTTTGGAAATCAGAACCAGCTTGCATCTCCTCTGCAACAAGTTCAGTCTAGTCTTGAGAAGAAAGTGACGAAACTGAAGGAATTGCGGAGAAAGAAGAAAGGTTGGAGCAAATATTCTTGGCCCCAAAAGCATGAGGAGATTCAGTTATTGTTCGGTCTCATTGACATCAAAATCCTATCAAGGGTTGTGAGAATGACGAGGATAACTAAAGAGCAGCTGTTTTGGTGTGAAGAAAAGATGAAGAAGCTAAATATATCTCACAGTAGGTTAGAGAGAGACCCATGTCCCATCCTCTTCCCTTGCTAGCTGGCAACTGAGAGACCTATGACAATGGTGGAAAGCGGCCAAACCAGTGAATGGATTTCCTCAAAGGATATTTCAGCATTTGGTTCTTCATTGAAATATAACGCAAAAGAGGAGTTGGAAATTTTTTTGAAAGGACAAAAGCTTAGTCGAGGCCAAGCAAATTTTATTCCTAGTCGAAGTGGTAGTGCTCCACCAAGTATGGAGGGTTCAGTTGCAGCAGTTGGAAATATGTTACCTGTGAAGGATTCCAGTCTGATTTCAGATTCAGGTTTTGAGGATGATAAGTCTGAAGGACAGCTACATGATCCTTCTTATGTTGCATATTGCTCCTGGGAGCTTAACTTGGATCCCAAGCTTCCTCCACGACAACTGCAAAGTCAAATTGACAATTATAAAGAAAATCAAGGCATTGCTCCTTCAGATAATGTTGGCATGGCTTCCCTTTCTACTGATGAGGGGCCCAACAAAGAGGGTGCACCTGAGCAAACTTCAGGAATCTTGTTCAATGCCAGCAGTATACCTAAGCCTGGGAAGAATGCAGGTCCATCTGCCAGTCTTCACAAAAGCTTGGTGGACTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTATATAACCAATCTCATTTATCAAGTCATGCTACAACTGAGGATTCAGTTGATGTTGATGGGAATGTGATTTCGTCAAGTGTTACCTCAATAGATTTATCAAACCAGTCAGACTCTGCTACATGTTCTACTAGTGTTGTGGAGACAGGAGCCCTGAACATAGATGCTTCTGAATTACTATCAAATGAAGTTTCTCTTGAAAATTTCCCAAGCTTACAGCATGCTGATGAAACCCAAAGCCTGCTAAAGGATCCGACATGCAACAAGGATGCTGTGCTGAAGGATTATATATCAGCAAGTGGAGTTATGCACGGAGAAGAGCATAAATTGGAAGCATCTAATGTTAGAAGACATAAGAAAGAACAAGATTATAGTAGGAATAAACTAAATCAATCTTTTACTCATGGAAATTCTTATCAAGTGCCAGGTGCGCCGTTCCAAGTAATTTCTCAAGGGATGAACAATGCACAAAGTTACTTGGGAATGCTTGCTTATAGTCATTCACAGTTCTCATCTCTTGGGATGCAATCATCATTGCCTTCTTCTGGACTTACTGGTCCCTTATATGCAACTCCAACAGCATTTATGACTTCGGGAAACCCATTTTATCCTAATTTTCGGCCATCTGGTTTATTCTCTCCACAATATAGCTTAGGTGGATATGCTATGAGTCCTACCTCAGTTCTGCCATATATGGCTGGATATTCTTCTCAAGGTGACCTGCCTCTTCCATTTGAAGCTGCAGGCAGTCAAGACTTGAATGGTGAAGCTACCATTGTTTCATCAAGAGAGGGGGTTCCACAAGCATGTGATTTACAAAATCGAAGCAAGATTTATGGGCAGTATGGATTATCATTGCAACCTTCATATGCTAATCCACTTAATATGCAATACTATCCCCACTCTTTTAGTGATGCATATCCTGTTGCTATTCAGCAGAATCAATTGGCATCAGGAACTCAGACTGGAGGACAGGTCTGTTCTCTAGTTTCACAGCAAGATCCAGCTTATGTAAATGGTCAAAATTTTGAGCCTTTATTACATGCTAGCTTGAGCATTCCAAGTTCAAAAAATATGGGGATCTCTGGAAGTAGCTATTTTGGAGGCTCCCATATGGGTATCATGACGCAATTTCCTTCCCTGTCTCCTGTTAGTCCAATCCTTCCATCCTCTCCGAGGGTTGGAACTAACCCTCTAGGTGAACAGAATGAGAAGAAAACTCCTACTGTTTGTGATAGAAATGCAGGATTTTCTTCTAGGCAGAGAGGAATTAGGAGTTTTGATGACTTCAAGAAGCCATCCTTTCCTGAGGAACTTAAATCCATCAATTCCAGGAAGTTTGAACTCTCTGATATAGCAGGACGTATTGTTGAATTCAGCATTGACCAACATGGAAGTCGATTCATCCAGCTCAAGCTGGAGAGTTGCAGTGCTGAAGAGAAGGTGTCGGTTTTTGAAGAAATCCTTCCACATGCCTCTAAATTAATGACAGATGTGTTTGGTAATTATGTGATTCAGAAGTTTTTTGAGCATGGAAATCCTGATCAGCGAAAGAAGCTTGCAGATAAGCTCTCTGGACAGATTTTACCATTAAGTTTGCAGATGTATGGTTGTCGTGTTATCCAGAAGGCCTTCGAGGTTATTGAACTTGATCAGAAGACACTATTAGCTGAGGAGCTTGATGGACATGTCATGAAATGTGTACATGATCAAAATGGCAATCATGTCATACAAAAATGCATAGAATGCATTCCGGTGGACAAAATCCAATTTATTATATCTGCTTTTCAAGGTCAAGTTCCTGCTCTTTCTACTCACCCATATGGATGTCGTGTTATTCAGAGAGTTTTGGAGAATTGTTCAGATGAGCAACATATTCAATGTATAGTGGATGAAATCCTGGAATCTGCTTGTGTCCTTGCTCAAGACCAGTATGGCAATTATGTGACTCAGCATGTCCTGAAGAGGGGGAAAAAAAATGAAAAAAATGAAATTATAAGTAAATTGACTGGGAAGATTGTACAACTGAGTCAGCACAAGTATGCTTCTAATGTTATTGAGAAGTGTTTGGAACATGGTGATGCAACGGAGCGAGAGACCTTGATTGCGGAAATAATTGGGCAACCTGATGAAGGCGATAATTTATTGACAATGATGAAGGACCAGTTCGCAAATTATGTGATCCAGAAAATTCTCGATATAAGCAATGACAGGCATCGGGAAATACTTCTCAATCGTATAAAAGTTCATATAGATGCTTTGAAGAAATATACCTATGGGAAACACATTGTTGCTCGCTATGAACAGCTTGCTGGTCCAGTAAGCGAGGCTGAGACATGTTGA 4248 0.4167 MNFFKVKKFRKPQKADGGNYMLEKAVPEPEEARPENGGDDQCKSANSDPAAEAEDDDDDFITNEVKRRLKELRRNSFMVLIPEEESCQEEEEEEEEEEAGEKRPEEWRDVEAEGQQWWRGFDALFEKYCERMLFFDRMSTQQLNEVGKGSQYPSTPRSASKKLASPFRCLSLKHFEEPDDETEHLQQPQNDPYQDIETAYVGQICLTWEALHCQYTQMCQKMSWQPESPTCYNHTAQQFQQFQVLLQRFIENEPFEKGLRAEIYARTRNTLPKLLQVPNIQGSDQQSTGDDSEMRVLGPDLNRIIENSILTFHIFLKRDKKKSSGVINPFGNQNQLASPLQQVQSSLEKKVTKLKELRRKKKGWSKYSWPQKHEEIQLLFGLIDIKILSRVVRMTRITKEQLFWCEEKMKKLNISHSRLERDPCPILFPCXLATERPMTMVESGQTSEWISSKDISAFGSSLKYNAKEELEIFLKGQKLSRGQANFIPSRSGSAPPSMEGSVAAVGNMLPVKDSSLISDSGFEDDKSEGQLHDPSYVAYCSWELNLDPKLPPRQLQSQIDNYKENQGIAPSDNVGMASLSTDEGPNKEGAPEQTSGILFNASSIPKPGKNAGPSASLHKSLVDLIQEDFPRTPSPVYNQSHLSSHATTEDSVDVDGNVISSSVTSIDLSNQSDSATCSTSVVETGALNIDASELLSNEVSLENFPSLQHADETQSLLKDPTCNKDAVLKDYISASGVMHGEEHKLEASNVRRHKKEQDYSRNKLNQSFTHGNSYQVPGAPFQVISQGMNNAQSYLGMLAYSHSQFSSLGMQSSLPSSGLTGPLYATPTAFMTSGNPFYPNFRPSGLFSPQYSLGGYAMSPTSVLPYMAGYSSQGDLPLPFEAAGSQDLNGEATIVSSREGVPQACDLQNRSKIYGQYGLSLQPSYANPLNMQYYPHSFSDAYPVAIQQNQLASGTQTGGQVCSLVSQQDPAYVNGQNFEPLLHASLSIPSSKNMGISGSSYFGGSHMGIMTQFPSLSPVSPILPSSPRVGTNPLGEQNEKKTPTVCDRNAGFSSRQRGIRSFDDFKKPSFPEELKSINSRKFELSDIAGRIVEFSIDQHGSRFIQLKLESCSAEEKVSVFEEILPHASKLMTDVFGNYVIQKFFEHGNPDQRKKLADKLSGQILPLSLQMYGCRVIQKAFEVIELDQKTLLAEELDGHVMKCVHDQNGNHVIQKCIECIPVDKIQFIISAFQGQVPALSTHPYGCRVIQRVLENCSDEQHIQCIVDEILESACVLAQDQYGNYVTQHVLKRGKKNEKNEIISKLTGKIVQLSQHKYASNVIEKCLEHGDATERETLIAEIIGQPDEGDNLLTMMKDQFANYVIQKILDISNDRHREILLNRIKVHIDALKKYTYGKHIVARYEQLAGPVSEAETC 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g2234 1415 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1066 1406 IPR033133 GO:0003723
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1267 1302 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 1021 1039 - -
Bisa06g2234 1415 SMART pum_5 1303 1338 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1194 1229 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1230 1266 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1158 1193 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1122 1157 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1086 1121 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1345 1380 IPR001313 GO:0003723
Bisa06g2234 1415 SMART pum_5 1267 1302 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1308 1341 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1090 1124 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1127 1159 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1349 1382 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1162 1195 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1205 1229 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1275 1304 IPR001313 GO:0003723
Bisa06g2234 1415 Pfam Pumilio-family RNA binding repeat 1234 1269 IPR001313 GO:0003723
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1230 1266 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 565 580 - -
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1194 1229 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 565 615 - -
Bisa06g2234 1415 CDD Pumilio 1081 1401 IPR033712 GO:0003723
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1303 1338 IPR001313 GO:0003723
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1339 1380 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 84 100 - -
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1158 1193 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 81 108 - -
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 15 65 - -
Bisa06g2234 1415 Pfam Protein of unknown function (DUF1666) 194 429 IPR012870 -
Bisa06g2234 1415 FunFam Pumilio homolog 1 isoform 2 1065 1412 - -
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1122 1157 IPR001313 GO:0003723
Bisa06g2234 1415 ProSiteProfiles Pumilio RNA-binding repeat profile. 1086 1121 IPR001313 GO:0003723
Bisa06g2234 1415 MobiDBLite consensus disorder prediction 1021 1050 - -
Bisa06g2234 1415 Gene3D - 1065 1407 IPR011989 -
Bisa06g2234 1415 SUPERFAMILY ARM repeat 1081 1402 IPR016024 -
Bisa06g2234 1415 Coils Coil 340 360 - -
Bisa06g2234 1415 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 711 1404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g2234 Bisa-ChrBisa06 66722416 66734756 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g2234 06 66722416 66734756 Bisa06g2234 06 66722416 66734756 ECH