Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g2080 ATGGGGGGCGCTTGTTCTAGGAAGCAAGAGCGGGACAATGAAGATAATTATCATAGAGGACTTTCACGAAGATACTGCAAAAGTGGGAGTTTGAAATGGTTGACTTCATCATTTTCTTATCCTTCTATAGATTTTCATTTACAAAAGGGAGGATGTCCTTCATTGTTGGATTTATGTGTTCGGAAAATATGTGAGGAAATTCACAAGTATAGCACATTTTCTATGGTTCCACGGGATGTAAGTCAGCAAATTTTTAATGAATTGGTGTACTCCCAACGTCTAACTGGTGCTTCCCTCAAAGCTTTTCAAGATTGTGCTCTCCAGGATTTTTACTTGGGAGAATATCCTGGTGTGAATGACAGTTGGATGCACATCATTTCATCACAGGGATTATCTTTACTATCTGTGGATCTTTCCGGGTCTGATGTCACAGATTATGGGTTGACTTATCTTAAAGATTGCAAAAATCTTCTAACCTTGAATCTCAATTACTGTGATCAGATTTCAGACCATGGCCTGGAGTATATCAGTGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAACAATACCATTTCTGCTCAAGGAATGAGCACCTTTCCTGCTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTACTGGCATTCCTGGAGGGCTTGTTCATCTTCAAGGTTTAACCAAGTTGGAATCTCTCAACATGAAGTGGTGTAATTGCATAACAGATGCTGATATGAAGCCTCTATCAGTGCTTACAAACCTGAAGAGTCTAGAGATTTCGCGCAGTAAAGTCACAGATTTTGGGATTACTTTCTTACAAGGATTACAAAAGCTTTCTATGTTAAATCTGGAAGGATGCCCTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGTTTCCTACCCTGTCGAACTTGAATCTCAATAGATGTAATCTTTCGGATAATGGATGTGAAAAGTTTTCCCGATTGGAAAATTTGAAAGTACTAAACTTGGGATTTAATGGCATAACGGATGCATGTTTAGCACACTTAAAAGGATTGACAAAGTTAGAGAGTTTGAACCTAGATTCATGTAGGATTGGTGATGAAGGATTGGTCAACCTGGCAGGCCTTCAGCAATTGAAATGCTTGGAATTGTCTGATACGGAAATTGGAAGCGATGGACTCCACCATATATCCAGATTGTCTAATCTGGAGAAAATAAACCTATCATTCACCATGGTTAGTGATGTTGGTTTGAGGAAATTGTGTGGACTTTCATCTCTGAAGTCCCTTAATTTGGATGCTCGCCAAATCACTGATACTGGACTAGCTGTTCTTACGGGTTTGACTGGGCTTACTGACCTGGATTTATTTGGTGCACGAATCACAGATTCTGGAACAACCTATTTGAGAAACTTTAAGAACCTAAGGTCCCTGGAAATATGTAGTGGAGGATTGACTGATGATGGTGTCAAAAATATTAAAGAGCTGTCATCTCTGATGTGCTTAAATTTATCCCAGAACTGCAGTCTTACAGACAAATCCCTGGAGTTGATTTCTGGGCTGACTAAGCTGATCTCTTTGAATGTTTCCAATTCTCATGTCACCAACGCCGGGCTGCAGCATCTGAAAACGCTCAAGAATTTGAGGTCTTTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATTAAGAAACTTCAATCAGACCTCCCGAATCTGATTAGCTTTCGGCCAGAGTAG 1731 0.4009 MGGACSRKQERDNEDNYHRGLSRRYCKSGSLKWLTSSFSYPSIDFHLQKGGCPSLLDLCVRKICEEIHKYSTFSMVPRDVSQQIFNELVYSQRLTGASLKAFQDCALQDFYLGEYPGVNDSWMHIISSQGLSLLSVDLSGSDVTDYGLTYLKDCKNLLTLNLNYCDQISDHGLEYISGLSNLTSLSFRRNNTISAQGMSTFPALVNLVKLDLERCTGIPGGLVHLQGLTKLESLNMKWCNCITDADMKPLSVLTNLKSLEISRSKVTDFGITFLQGLQKLSMLNLEGCPVTAACLDSLAEFPTLSNLNLNRCNLSDNGCEKFSRLENLKVLNLGFNGITDACLAHLKGLTKLESLNLDSCRIGDEGLVNLAGLQQLKCLELSDTEIGSDGLHHISRLSNLEKINLSFTMVSDVGLRKLCGLSSLKSLNLDARQITDTGLAVLTGLTGLTDLDLFGARITDSGTTYLRNFKNLRSLEICSGGLTDDGVKNIKELSSLMCLNLSQNCSLTDKSLELISGLTKLISLNVSNSHVTNAGLQHLKTLKNLRSLTLESCKVTANDIKKLQSDLPNLISFRPE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g2080 576 Pfam Leucine rich repeat 471 530 IPR001611 GO:0005515
Bisa06g2080 576 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Bisa06g2080 576 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Bisa06g2080 576 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Bisa06g2080 576 FunFam F-box/LRR-repeat protein 14 299 382 - -
Bisa06g2080 576 SMART LRR_CC_2 301 325 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 154 179 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 397 421 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 469 493 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 518 542 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 228 253 IPR006553 -
Bisa06g2080 576 SMART LRR_CC_2 349 373 IPR006553 -
Bisa06g2080 576 Gene3D Ribonuclease Inhibitor 400 479 IPR032675 -
Bisa06g2080 576 Gene3D Ribonuclease Inhibitor 124 219 IPR032675 -
Bisa06g2080 576 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Bisa06g2080 576 Gene3D Ribonuclease Inhibitor 291 389 IPR032675 -
Bisa06g2080 576 Gene3D Ribonuclease Inhibitor 220 290 IPR032675 -
Bisa06g2080 576 PANTHER UNCHARACTERIZED 325 488 - -
Bisa06g2080 576 SUPERFAMILY RNI-like 127 462 - -
Bisa06g2080 576 FunFam Leucine-rich repeat family protein 220 298 - -
Bisa06g2080 576 FunFam Predicted protein 118 219 - -
Bisa06g2080 576 ProSiteProfiles Leucine-rich repeat profile. 327 347 IPR001611 GO:0005515
Bisa06g2080 576 SUPERFAMILY L domain-like 422 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g2080 Bisa-ChrBisa06 64691950 64699636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g2080 223 504 Receptor kinase-like Gene Family AT1G75820 25.524 4.88e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g2080 06 64691950 64699636 Bisa06g2080 06 64691950 64699636 ECH