Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa06g1583 ATGACGGTCTCTACTATAGCTTTGTATGCTAGCCCACCAAGCAGTGTGTGTTCGACGCCGCACCCTTGCCACATCAACGCCCACGCGTCTTACGATTTCGATTTGAGCTCCCGATCTTCGTCGTCGTCGTCGTCTTCCACGACTCCGTCCACATCTCAGAAGCCAGTAATGAGTGGCCTCTCCTGCCTGTTCTCCTCGCCGACGGTGAAGCACGCTCCGTTATCGAGCTTTTCCGGTGCCGGAGAGGAATTGGGTTCTTTGGCCGAATTGAAGGAATTGAGTAGCTCGTTCTCCTATTCACCTAGTAAATTCTCTGGGTCTTCTTGGAAAAGGGATCAGAGCCCCGTTTCGGTTTTCCAGGGCCCAGTCTCGTGTAGTAGTAGTAGCATTTCTGGTTCTGCAAGGAGTCTCCCAGTGAGGATCGGATGCGATAGCTCAATTCGATGTGGGAATAGTGGATTATTAGATGGGTTTGTGAGGAACGCATTGGGGTCGTGCTTGGATTACGATTCCCCAGGTTTGGATATTCGTGGTGGTGACTTAGATGTGGGGTCTCCTTCATCTTCCTTAGTGGATGAATTGACCTTCAATTTGGAGGATGCTTTTGTGGGGGGAACTTTCGAGCCATACGCTAGAGAATTACTAGCGGGCGCTCAGTTGAGGCACAGGATCTTCTGTGAAGAATTCGTTATTAAGGCTTTCTTCGAAGCGGAGAAAGCGCACAGAGGGCAGATGCGAGCTTCTGGTGATCCGTATTTGCAACACTGTGTTGAAACAGCAGTTCTGCTTGCTCTGATTGGTGCCAACTCCACAGTTGTTGCTGCAGGGCTTTTGCATGACTCACTTGATGATTCATTTCTGAATTACGATTACATATGTGGGACATTCGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAGCTAAGTCACTTGAGCAAGCTAGCACGGGAGAATAATACAGCTAGCAAGTCAGTGGAGGCAGATCGGCTGCATACAATGTTCCTTGCCATGGTTGATGCAAGAGCTGTCCTCATCAAATTGGCAGATCGATTACATAATATGATGACTCTGGATGCATTGCCGGTGATCAAGCAACAAAGGTTTGCAAAAGAGACCTTGGAGATTTTCGCACCTTTGGCCAACCGATTGGGGATATCTACTTGGAAGGAACAATTAGAAAACTTGTGTTTTAAGCATTTAAATCCAGACCAGCATAAGGAGATTTCTTCAAAGCTTGTCGAGTCTTTTGATGATGCAATGATTACTTCTGCTATTGAGAGATTAGAGCAAGCACTTAAAGATGAATGCATTTCTTATCATGTCCTTTCTGGGCGGCACAAGAGCTTGTACAGCGTTTACTGCAAAATGCTGAAGAAGAAGCTAACCATGGATGACATTCATGATATTTATGGGCTGCGCTTGATTGTTGACAAGGAGGAGGACTGTTACAAAGCCTTGACAGTAGTTCACCGGTTATGGTCTGAGGTACCCGGAAAGCTTAAAGACTATATAAGTCATCCCAAGTTCAACGGATACAAATCTCTGCACACTGTAGTGATGGGTGAAGGAAAGGTTCCCCTTGAAGTACAAATCCGGACCAAAGAGATGCATTTGCAGGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGGCGATTGCCAGCATTCTTCTTTTGTCCTTCAGATGGTTGAGTGGGCTCGCTGGGTTGTAACATGGCATTGTGAGACAATGAGTAAAGACTGTTCCGTTAGATACGCCGGGGTAGTTAAGCCACCATGCAAGTTCCCTTCCCATGCTGATGATTGCCCACATTCTTATAAACCTCATTGCGGTCATGATGGCCCTGTGTTCATAATCATTATTGAGAATTATAAGATGTCTGTCCAGGAGTTTCCTGCAAACTCGACTGTAATGGACTTGTTGGAAAGAGCTGGGCGAGGAAGCTCTAGATGGACCCCATATAGGTTTCCACTGAAGGAAGAACTAAGGCCGAGGCTAAATTATGAGCCTGTGAGTGATCCCAAGTGTAAGTTGAATATGGGAGATGTGGTGGATCTTACACCAGCCATACCTGACAAGTATCTGACAGAGTATAGGGAAGAAATTCAGCGTATGTATAATAGAGGGTTAACTGTACCTGCTGCTTCAAGTGGCATGGTTGGCTCAAGAAGCTGA 2187 0.4632 MTVSTIALYASPPSSVCSTPHPCHINAHASYDFDLSSRSSSSSSSSTTPSTSQKPVMSGLSCLFSSPTVKHAPLSSFSGAGEELGSLAELKELSSSFSYSPSKFSGSSWKRDQSPVSVFQGPVSCSSSSISGSARSLPVRIGCDSSIRCGNSGLLDGFVRNALGSCLDYDSPGLDIRGGDLDVGSPSSSLVDELTFNLEDAFVGGTFEPYARELLAGAQLRHRIFCEEFVIKAFFEAEKAHRGQMRASGDPYLQHCVETAVLLALIGANSTVVAAGLLHDSLDDSFLNYDYICGTFGAGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLAMVDARAVLIKLADRLHNMMTLDALPVIKQQRFAKETLEIFAPLANRLGISTWKEQLENLCFKHLNPDQHKEISSKLVESFDDAMITSAIERLEQALKDECISYHVLSGRHKSLYSVYCKMLKKKLTMDDIHDIYGLRLIVDKEEDCYKALTVVHRLWSEVPGKLKDYISHPKFNGYKSLHTVVMGEGKVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVVTWHCETMSKDCSVRYAGVVKPPCKFPSHADDCPHSYKPHCGHDGPVFIIIIENYKMSVQEFPANSTVMDLLERAGRGSSRWTPYRFPLKEELRPRLNYEPVSDPKCKLNMGDVVDLTPAIPDKYLTEYREEIQRMYNRGLTVPAASSGMVGSRS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa06g1583 728 SMART RelA_SpoT_2 446 556 IPR007685 GO:0015969
Bisa06g1583 728 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 84 696 - -
Bisa06g1583 728 FunFam GTP pyrophosphokinase RelA 213 403 - -
Bisa06g1583 728 SUPERFAMILY Nucleotidyltransferase 393 582 IPR043519 -
Bisa06g1583 728 Pfam HD domain 237 387 - -
Bisa06g1583 728 Gene3D Hypothetical protein af1432 215 403 - -
Bisa06g1583 728 ProSiteProfiles HD domain profile. 252 356 IPR006674 -
Bisa06g1583 728 SUPERFAMILY HD-domain/PDEase-like 217 403 - -
Bisa06g1583 728 ProSiteProfiles S4 RNA-binding domain profile. 669 706 - -
Bisa06g1583 728 Pfam Region found in RelA / SpoT proteins 446 555 IPR007685 GO:0015969
Bisa06g1583 728 CDD NT_Rel-Spo_like 426 544 IPR007685 GO:0015969
Bisa06g1583 728 Gene3D Beta Polymerase, domain 2 406 536 IPR043519 -
Bisa06g1583 728 CDD HDc 250 378 IPR003607 -
Bisa06g1583 728 SMART hd_13 248 365 IPR003607 -
Bisa06g1583 728 FunFam GTP pyrophosphokinase RelA 404 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa06g1583 Bisa-ChrBisa06 54069432 54073469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa06g1583 245 555 EF-hand Containing Proteins AT3G17470 29.129 4.95e-37 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g1583 06 54069432 54073469 Bisa06g1583 06 54069432 54073469 ECH