Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1286 ATGGCGACGCCGTCGTTGGAAGAAGAAACAGCTAAAAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGATAGCAACCTTCCCAGAGATGTTTTTCTCATGAAAACTATCACTGAAAGCGAAGATGGCATGGTTAGCTTGGCTTTGATTTGTTCTTTTTCTCGGATGAGAAAACATCTTAATCTGGAGGATGTAAAGGCGAATGAAGTTCCCGAAGATACTGTTAAAGCTGTTGCTGAAACTTTGAGAAAATCGGCTTCACTGAAGATCTCTGAAGATGGGAAAAAAGTTGGCAGGACAACCGAACTTCTGAAACCAGAAGAGATAATTGAGCAGGTGGACATAAGAACAATTGCTGCATCACCTTTTGAATATGATGTGAAGCGTGAAGATGTTGAGGCATTTTTTGGTCAATCTGCCAAGGTTAATAGTGTTAGGCTTCCCCGTCATGTTGGAGACAAAAGGTTCTTCTGTGGTACTGCTCTCGTTGAGTTTTCATCAGAACAGGATATTGAAAAAGTTATGGGGCAAAAATTGGTCTATGCAGGGGCCGAGTTAGAATTGAAGCCAAAGAAGGACTTTGATGCAGAGAGAGAAAGAGAGTTAGAAGAGCATGAAAAATCTGGTGCACGTAATGGTTCAAATCGCCAGAATAACTTGAATGGAGAAGCAAACTACCCTAAGGGCGTAATTATTTCCTTCAAGCTAAAAAGCAATTCAGAAGTTGCTCCAGGACATAATGGTGCTCCTCAAGAAGCCATTGATAATAACAGTGTCTCTACCACAGATGAACAAAATCCCTCAGAAAGTGCTGCTGAAGTTAATGAACAAAAGGTATCAGATTCCACTGATAATGAAAAAGAAAATGAAGTTTTCAGTGAAGGACAGGAAGCTGAAGGTGAAGAAAAGAACCAAGAAGCTGATGAAAAAAATTCAGCCACTGCTTACAAGGACAACATGGATGTTGTCCTGCGTGAGGATATAAAGGGTGTCTTAGAGAAGTTTGGTACTGTGAAGTACATTGATTTTAAGATCGGAGCAGATTCAGGACATGTCCGGTTTGAAGAACCTGAGGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTGCTGAAAAGGGAGGTTTGGCTGTGAAGAATTATATTGCTATTCTTGATCCAGTGACTGGGGAGGCTGAAAGGGAATACTGGAGTCTTCTCCGTGGTAACCAAGAAAAGCGCCGTGACTTTAAGGGTGCCCGAGGAAGGGGAGGCAGGCATGGTAGATGGGGAAAACATGCCCGCTCGAGAGAGAATGAATATGCAATGAATCGCCCAAATAAAGCTCAGAAAGTTAAAGCAGTGTAA 1344 0.4226 MATPSLEEETAKKVIRQVEFYFSDSNLPRDVFLMKTITESEDGMVSLALICSFSRMRKHLNLEDVKANEVPEDTVKAVAETLRKSASLKISEDGKKVGRTTELLKPEEIIEQVDIRTIAASPFEYDVKREDVEAFFGQSAKVNSVRLPRHVGDKRFFCGTALVEFSSEQDIEKVMGQKLVYAGAELELKPKKDFDAERERELEEHEKSGARNGSNRQNNLNGEANYPKGVIISFKLKSNSEVAPGHNGAPQEAIDNNSVSTTDEQNPSESAAEVNEQKVSDSTDNEKENEVFSEGQEAEGEEKNQEADEKNSATAYKDNMDVVLREDIKGVLEKFGTVKYIDFKIGADSGHVRFEEPEAAQKARAAAVLAEKGGLAVKNYIAILDPVTGEAEREYWSLLRGNQEKRRDFKGARGRGGRHGRWGKHARSRENEYAMNRPNKAQKVKAV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1286 447 Pfam La domain 14 84 IPR006630 -
Bisa05g1286 447 CDD LA_like_plant 10 99 - -
Bisa05g1286 447 Gene3D - 6 106 IPR036388 -
Bisa05g1286 447 MobiDBLite consensus disorder prediction 192 224 - -
Bisa05g1286 447 MobiDBLite consensus disorder prediction 251 278 - -
Bisa05g1286 447 Pfam RNA binding motif 323 415 IPR014886 GO:0003723
Bisa05g1286 447 MobiDBLite consensus disorder prediction 407 447 - -
Bisa05g1286 447 SMART la 8 100 IPR006630 -
Bisa05g1286 447 MobiDBLite consensus disorder prediction 241 314 - -
Bisa05g1286 447 MobiDBLite consensus disorder prediction 279 314 - -
Bisa05g1286 447 PANTHER LUPUS LA PROTEIN-RELATED 10 297 IPR045180 -
Bisa05g1286 447 MobiDBLite consensus disorder prediction 192 211 - -
Bisa05g1286 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Bisa05g1286 447 Gene3D - 295 415 IPR012677 -
Bisa05g1286 447 SMART rrm1_1 314 378 IPR000504 GO:0003723
Bisa05g1286 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Bisa05g1286 447 FunFam La protein 2 6 106 - -
Bisa05g1286 447 ProSiteProfiles xRRM domain profile. 307 427 IPR014886 GO:0003723
Bisa05g1286 447 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Bisa05g1286 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 175 IPR000504 GO:0003723
Bisa05g1286 447 SUPERFAMILY RNA-binding domain, RBD 116 365 IPR035979 GO:0003676
Bisa05g1286 447 Gene3D - 107 200 IPR012677 -
Bisa05g1286 447 SUPERFAMILY "Winged helix" DNA-binding domain 7 102 IPR036390 -
Bisa05g1286 447 CDD RRM1_La 117 189 - -
Bisa05g1286 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bisa05g1286 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bisa05g1286 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1286 Bisa-ChrBisa05 22538189 22541827 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1286 05 22538189 22541827 Bisa05g1286 05 22538189 22541827 ECH