Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1056 ATGAGCAACGCTGGGAACGTGAACAGGGATGAAGAGTTCGGAACGTGGTGGAATGGATTTCCTACCACACCATATCACAATCTTCATCATCGTCATCGTCACCATGAGCATTTGGCAATCGGTTCTCCGGTATGGAGGTTCTCTCACTCCTCACATTCTTCTCCGTCAACTTCTTTCTCTAATGGGCTTCATGTTTCCGCCCATAATCTAGCTCCATTTCAGGATAGCAAGCTTCTAACACCTAGCGATCATTCCTCAACTAATTTGTTATTGGACCTCGAGCCATCAGATTTTCATAATGGGAAGAGTATCATCGATATGCAGGGGGTCGATCTGGAACTGTCTATGGATTTCTATAGATTGAATATTGTAGATGGACAGGGAAATGGTAACAAAACCAGGGGACCCGAAATAGACTCCTACGGGTTTGGGTTAGACACTTCATCTTTTGATGCAAATATTCCCGGCTTTACTGAAACACGTAACCCATATGAAGATTTTTGCACTGACGTTCCCAATTACGAGTGTATCCCATCTTCTACTTGGGGAGTTTCACCAAGTTTGGTTGCTGATATGAAGTGGCCAATCCCTGCCTCGGGAAGAGGACACATTTCTTCTATCGCTCATGGCCAATCCAGCGCTTTGAATTTGGGCTCCAGTCGGAACATGAACCTAATATATCAAAGCAAGAAACAGGGAAGCGGTAGCTGCGAAGGAGAATTTCCATGGCAGAAGCCATCAATCGTTAACCCCTACCTTTGTGATGTTTTAACTGGCTCACAACCTTGCGGAGTGGATTACGATGAAAGCAGGAGTGTCAGAAATCCCTTAAGATTCTCTCAGGTCGTTCACCCCAAGCTTGCTTTGAATCTGGATAGTCCTTCCCATTATTGTTCAACAACGAAAGAAAAAACAAGCGGAACTGCCAACTTTCTGCTGCCTGAATTTCTCTCGTCCAAAAGAGGTGGCGGCGATCCAGTGGCAATTAGATGTGATAATAGTTTTATCATACAAGGAAAAGATATAAATTATTGCATTGATAACGGGCGCAATTCTTTGAGAGCTTGCAAAAAGGATTCCTACAATGAATTTGCAATTGCAACTGTGGGAGAGAGAGTTTCTAAACACATTTCTTATACTCCTGGTGGTCAAATTTGTGGGATTAATGACAATCTTGCTGGGAATTTCCCATTGCCCTACTATTCTTGGACTGAGTACCAATATTGCGTTTACAATATGGCAAAGGATCAGAATGGCTGTCGCTTCCTACAAAAGATTGTTGATAAGGGAAACTCTGAAGATATGCAGATGGTATTTGAGGGAATCATAGATGATGTTATTGAACTTATGATGGACCCTTTTGGAAATTATCTTGTGCAGAAGTTGCTTGATGTATGCAGAGAAGAACAGAAATTGCAGATTGTTTGCATGGTGACTAAAGAACCAGGGCAGCTTGTCAGAACATCTTTAAACATGCATGGCACACGCGTTGTACAAAAGTTGATTGAGACTCTCAAGTCTAGAAAACAAATTTCATTAGTGAAATCAGCCCTTCAAGCAGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCATGTCATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCTGCTGCAAAGTTTTGTGCTGACATAGCTACTCATCAGCATGGGTGTTGTGTACTGCAACGTTGCGTTGATCATTCAATGGGCAAATATCGAGATAAGCTTATCACAGAAATATGTAGACACGCGCTTCTCCTTGCTCAAGATCCTTTTGGAAATTATGTTGTTCAGTATATAATAGAGATGGAGATCCCAACTGCCTCAGCCAAGCTTATTTCTCTGTTCAAAGGGAACTTTGTAAACCTCTCCAAGCAAAAATTTAGCAGTCATGTGATTGAAAAATGTCTTAAGCATATTGGAGAGAGCAGATCGAGGATCGTCCGAGAATTGTTGTCTGCACCTCACTTCGAACAGTTATTGCAAGACCCATTTGCTAACTATGTCATTCAGTCTGCTCTTACAACGACCAAGGGTTCTCTTCATGCATCTTTGGTTGAAGCAATTCGCTCCTACAAAATCTTGCGCTCCAGTCCATATTGCAAGAGGATTTTCTCGGGAAACCTACTTAAGAAGTGA 2169 0.4172 MSNAGNVNRDEEFGTWWNGFPTTPYHNLHHRHRHHEHLAIGSPVWRFSHSSHSSPSTSFSNGLHVSAHNLAPFQDSKLLTPSDHSSTNLLLDLEPSDFHNGKSIIDMQGVDLELSMDFYRLNIVDGQGNGNKTRGPEIDSYGFGLDTSSFDANIPGFTETRNPYEDFCTDVPNYECIPSSTWGVSPSLVADMKWPIPASGRGHISSIAHGQSSALNLGSSRNMNLIYQSKKQGSGSCEGEFPWQKPSIVNPYLCDVLTGSQPCGVDYDESRSVRNPLRFSQVVHPKLALNLDSPSHYCSTTKEKTSGTANFLLPEFLSSKRGGGDPVAIRCDNSFIIQGKDINYCIDNGRNSLRACKKDSYNEFAIATVGERVSKHISYTPGGQICGINDNLAGNFPLPYYSWTEYQYCVYNMAKDQNGCRFLQKIVDKGNSEDMQMVFEGIIDDVIELMMDPFGNYLVQKLLDVCREEQKLQIVCMVTKEPGQLVRTSLNMHGTRVVQKLIETLKSRKQISLVKSALQAGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFYAAAKFCADIATHQHGCCVLQRCVDHSMGKYRDKLITEICRHALLLAQDPFGNYVVQYIIEMEIPTASAKLISLFKGNFVNLSKQKFSSHVIEKCLKHIGESRSRIVRELLSAPHFEQLLQDPFANYVIQSALTTTKGSLHASLVEAIRSYKILRSSPYCKRIFSGNLLKK 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 441 476 IPR001313 GO:0003723
Bisa05g1056 722 CDD Pumilio 409 716 IPR033712 GO:0003723
Bisa05g1056 722 FunFam Pumilio homolog 9 398 722 - -
Bisa05g1056 722 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 380 722 IPR033133 GO:0003723
Bisa05g1056 722 Gene3D - 397 719 IPR011989 -
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 405 440 IPR001313 GO:0003723
Bisa05g1056 722 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 224 715 - -
Bisa05g1056 722 SMART pum_5 553 588 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 517 552 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 625 659 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 441 476 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 480 515 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 405 440 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 589 624 IPR001313 GO:0003723
Bisa05g1056 722 SMART pum_5 662 697 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 593 612 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 410 443 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 446 477 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 522 551 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 629 662 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 485 506 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 558 591 IPR001313 GO:0003723
Bisa05g1056 722 Pfam Pumilio-family RNA binding repeat 666 685 IPR001313 GO:0003723
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 517 552 IPR001313 GO:0003723
Bisa05g1056 722 SUPERFAMILY ARM repeat 403 715 IPR016024 -
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 660 697 IPR001313 GO:0003723
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 589 624 IPR001313 GO:0003723
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 553 588 IPR001313 GO:0003723
Bisa05g1056 722 ProSiteProfiles Pumilio RNA-binding repeat profile. 477 515 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1056 Bisa-ChrBisa05 18212226 18216953 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1056 05 18212226 18216953 Bisa05g1056 05 18212226 18216953 ECH