Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0258 ATGTTCTGCAAGTCTGCCAAAGAATTTAAGCATGACGTATTCTACCGTGTCTTCAGTTTAATGCTTGGTTCAATGTTATGTCTAAGTTGTTTCAGAAAAGCTTGTGAATTAAGTAAAAATCGTTTTATTAGATTCACACAAAGTCCCAACTCCCAAACCTTCATCTCATGGCTTCTCTCCATTGGCTCTGTGTTTTTTGCTTCTTCCTCTCGTTCTTTCCCCTTTCTGCATACCCTGCACTGCTATTTCAGAATAAGTTTATATATGTTGTGGCAGGGTTTCAACTGGGAATCAAGCAACAAAGGAGGATGGTACAACTCCCTCAAGAGCTCCATCCCTGATATTGCCTCCGCCGGAATCACTCATGTTTGGCTCCCTCCTGCTTCCCAATCTGTTGCTCCTCAAGGGTACCTTCCGGGAAGGCTATACGATCTTGATGCATCAAAATACGGTTCCAAGGATGAACTGAAGTCACTGATTGCAGCTTTCCACGATAAGGGGATTAAATGCTTGGCTGACATCGTCATCAACCACAGAACTGCAGAGAGGAAGGACAGCAGAGGAATTTACTGCATCTTCGAAGGAGGCACACCAGATTCGCGTCTCGATTGGGGTCCGTCTTTCATTTGCCGAGACGACACCGCCTATTCAGACGGCACCGGAAATCTCGACAGCGGCGAGGGTTACGAGGCTGCACCGGACATTGACCATCTCAATCCTCAAGTTCAGACAGAATTGTGGGATTGGATGAACTGGTTGAAGACCGAAATAGGGTTCGATGGATGGCGATTTGATTTCGTGAAAGGGTACGCACCCAGTATTACCAAAATCTATATGCAAAATACTTCGCCGGATTTCGCAGTCGGAGAGAAATGGGATTCAATTGCTTACGGGCAGGACGGGAAGCCCGATTATAATCAGGACGGTCATCGTGGTGCGTTGGCGAGTTGGGTGGAATCTGCCGGCGGTGATGTCACCGCCTTCGATTTCACAACCAAAGGTATTCTTAATGCCGCCGTACAAGGCGAACTATGGAGGCTGAAGGATTCAAAAGGGAAGCCACCGGGAATGATAGGGAAAAAGCCAGAAAATGCAGTGACCTTTATTGACAATCATGACACTGGTTCCACTCAGAGGCTCTGGCCATTCCCATCTGATAAAGTGATGCAGGGATATGCTTACATTCTCACGCATCCTGGGACCCCTTCCATATTCTACGATCACTTGTTGGAATGGGGTCTAAAAGAGCAGATAAGCAAGTTGAGTGAGATAAGGAGGAGGAATGGAATCAACGTGAAAAGCAGTGTGGAGATATTAGCAGCAGAAGCAGATCTGTATATGGCAAAGATAGATGGGAAGGTGATAATGAAGATTGGGTCAAAGATGGACATTGGAGGACTAGTTCCATCTAATTTTGGACTGGCTACATCGGGCCAAGACTATGCTGTGTGGGAGGCCTTTGGATTTGCTGCTTGCCTTGAATCATTTTGA 1491 0.4641 MFCKSAKEFKHDVFYRVFSLMLGSMLCLSCFRKACELSKNRFIRFTQSPNSQTFISWLLSIGSVFFASSSRSFPFLHTLHCYFRISLYMLWQGFNWESSNKGGWYNSLKSSIPDIASAGITHVWLPPASQSVAPQGYLPGRLYDLDASKYGSKDELKSLIAAFHDKGIKCLADIVINHRTAERKDSRGIYCIFEGGTPDSRLDWGPSFICRDDTAYSDGTGNLDSGEGYEAAPDIDHLNPQVQTELWDWMNWLKTEIGFDGWRFDFVKGYAPSITKIYMQNTSPDFAVGEKWDSIAYGQDGKPDYNQDGHRGALASWVESAGGDVTAFDFTTKGILNAAVQGELWRLKDSKGKPPGMIGKKPENAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHLLEWGLKEQISKLSEIRRRNGINVKSSVEILAAEADLYMAKIDGKVIMKIGSKMDIGGLVPSNFGLATSGQDYAVWEAFGFAACLESF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0258 496 Gene3D - 430 486 IPR013780 -
Bisa05g0258 496 Pfam Alpha amylase, catalytic domain 115 406 IPR006047 GO:0005975
Bisa05g0258 496 PANTHER ALPHA-AMYLASE 70 486 - -
Bisa05g0258 496 SUPERFAMILY (Trans)glycosidases 83 419 IPR017853 -
Bisa05g0258 496 Pfam Alpha-amylase C-terminal beta-sheet domain 427 485 IPR012850 GO:0004556|GO:0005509|GO:0005975
Bisa05g0258 496 Gene3D Glycosidases 89 429 - -
Bisa05g0258 496 PRINTS Alpha-amylase signature 167 178 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0258 496 PRINTS Alpha-amylase signature 363 375 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0258 496 PRINTS Alpha-amylase signature 259 270 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0258 496 SMART alpha-amyl_c2 426 486 IPR012850 GO:0004556|GO:0005509|GO:0005975
Bisa05g0258 496 SUPERFAMILY Glycosyl hydrolase domain 430 485 - -
Bisa05g0258 496 SMART aamy 88 425 IPR006047 GO:0005975
Bisa05g0258 496 CDD AmyAc_arch_bac_plant_AmyA 89 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0258 Bisa-ChrBisa05 4048821 4052488 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0258 83 485 Glycoside Hydrolase AT4G25000 71.358 0.0 581
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0258 05 4048821 4052488 Bisa05g0258 05 4048821 4052488 ECH