Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2515 ATGCAAAATGGGTCGGAGGGATTCCCGGGTTCATTCATGGCAGTCTTAAATTGTTTTCGGGATTCTGACATTTCTGTTGCCTGCTCTTCGACGTTTGCAGATGAGGTCGAACTCGAAGAGGATGAGAGGGAGCCAGTTGATGGAGATGGGTTAGACGATGAAGAGGATGAGGACGAAGAGGAAGGTCAGGATGAATACGAAAAAGATGGATTTATTGTTGATGATATTGACGAAGAAGAGGAGCAGGATGAAGAAGAAGAGAGGGCAGAAAGTGATGAGGAGCGGCAGAGGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTTCTTGATGAAGATGATTATGAGCTCCTGGAAGACAACAATATCAATATTCACCGTCGGAAGGAGAGCAAAAAGTTTAAGCGGCTGAAAAAAGGTCAGAGGGATACTGAGGAGGAGCCCTCTGGTTTTTCAGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGGTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGGGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAGGAGGAGGAACAAGGAGAAGAAGAGGAGGATGCTGACATTGGTGAAGAAGATGAAATGGCGGACTTCATTGTGGATGAGGAAGAAGATGAGAATGGAGCTCCTATGAGACGAAGGAAACTGAAGAAGAAGAAAACTAGACAGGCACCTGGAGTCTCTTCCTCTGCATTGCAAGAAGCTCAGGAATTATTTGGTGATGTTGAAGAGTTGTTGCAGTCTCGCAAGCAGAGTCTAGAATCACGTGAATATAGAGAAACTAGACTTGAAGATGAATTTGAGCCAATTGTTCTTTCAGAGAAGTATATGACAGAGAAGGATGACCGGATTAGGGAGCTTGATATTCCAGAAAGAATGCAGATATTGGAGGAGAGTACTGGTCCGCCTCCGTTAGATGCAAGTAGTATAGATGAGGAGGGTAATTGGATAGATGGGCAAATTAAGGGAATGGCTCCCTGGATTAACAAGAAAGATATCATCAGATTTTTGGAACTGCATCATGTGCAGAAGTTAGATATTCCGTTTATTGCTATGTATAGGAAGGAGGAGTGCTTAAGCCTATTGAAAAATCCTCAGCAACCTGATGGCAATGAGAATTGGGATAAGAATGAAAAGACACCAACTTTAAAATGGCACAAGGTACTTTGGGCAGTTCAGGACTTGGACCGTAAGTGGTTGCTTCTTCAGAAACGGAAAAGTGCCCTCCAAGCATACTATAATAAACGGTTTGAAGAAGAGTCCCGCCGGGTCTATGATGAAACAAGACTTGAATTGAACCAGCAACTGTTTGAGTCAGTTATGAGATCACTGAAAGCTGCAGAAACAGAGAGGGAGGTCGATGATGTTGACTCCAAATTCAACTTGCATTTTCCTCCAGGTGAAGTTGGCGTTGATGAAGGTCAGTTTAAGAGACCTAAACGGAAATCAGCATATAGTTCTTTCAGTAAAGCAGGGCTTTGGGAGGTTGCAAGCAAGTTTGGGCGTAGTTCTGAACAACTTGGAATGATTCTTTCTCTAGAAAAAATGTTGGACGAGTTGGAGGATCCGAAGGAAACTCCAGAGGAGATGGCTTCAAACTTTACATGTGCTATGTGTGATACACCTCAGGAAGTACTTAAATGTGCTAGGCACATGGCTGCTGTTGAGATAAGTTGTGAGCCTAGCATTAGGAAACATGTTCGTACCAACTTTATTGACCATGCCGTGGTTTCAACTTGTCCCACTGCTGATGGAATTGTAACTATAGATTCTTTCCATCAGTTTGCTTGGATAAAGTGGTTGCGAGAGAAGCCTTTGTCTAAATTCGAGGATGCACAATGGCTCCTTATACAAAAGGCAGAAGAGGAAAAACTCCTTCAAGTTACTATTAAGCTGCCTGAACAGTATCTTGAAAAGTTGACAAATGAATTCAATGAATATTACATTAGTGACAGTGTCAGTAGGTCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGCTTTCTTTTACCATCAATGGAAAAAGAAGCAAGAGCCTACTTAACAAGCAAAGCAAAGAATTGGTTACTAGTGGAGTATGGAAAGGCCTTGTGGAATAAGGTTTCTTTGGGACCTTATCAACGGAAGGATAATGATCTTAGCTCTGATGAGGAGGCTGCCCCTAGGGTTATGGCTTGCTGTTGGGGTCCTGGAAAGCCACAAACAACTTTTGTAATGCTAGACTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGGTCCCTTACTTTACGATCTCAGAATGTTAATGACCAGCAACGTAAGAAAAATGACCAGGACCGTGTGTTGAAGTTCATGACTGACCACCAGCCACATGTTGTTGTTCTAGGAGCGGTGAATTTGTCTTGTACGCGTTTGAAGGATGATATATATGAGATCATTTTTAAAATGGTTGAGGAAAACCCTAGAGACGTTGGGCATGAGATGGATGGGCTCAGCATTGTGTATGGAGATGAATCTCTTCCCCATTTGTATGAAAATTCTCGAATTTCCTCTGAACAGCTTCCTTCACAACAAGGTATAGTGAGGCGAGCTGTAGCACTTGGTAGGTATCTGCAGAATCCCTTGGCCATGGTTGCAACATTGTGTGGACCTAGAAAAGAAATTTTGTCATGGAAACTCAGTTCTTTGGAGGGCTTTCTTAACCCTGATGAGAAATTTGGGATGGTAGAGCAGATTATGGTAGATGTGACCAATCAGGTGGGCCTAGACATTAATTTAGCCATAAGTCATGAATGGTTATTTGCTCCCTTGCAGTTTATTTCTGGCCTTGGTCCAAGAAAGGCTGCATCCTTACACAGGTCCCTGGTGAGAGCTGGAGCAATTTTTACTCGGAAGGACTTCGTGACAGAACATAAACTGGGTAAAAAGGTTTTTGTAAATGCTGTAGGTTTCCTGCGTGTTCGGCGGAGTGGGTTGGCTGCAAGCAGTAGCCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCAGAGTCATACACTCTTGCACAAGAGTTGGCTAAAGATGTGTATGAAGCGGATGGCTCAGGGGATGCAAATGATGATGATGATGCACTGGAGATGGCTATAGAGCATGTGAGAGATCGGCCTAGTTATTTGAAAAACCTTGATGTTGAGGAGTATGCCTCACAGAAGAATCGGAAAAACAAAAGAGAAACTTTCTATGACATAAAAAGCGAGTTGATTCAGGGATTTCAGGATTGGCGTAAACAGTATGAAGAACCAAATCAGGACGAGGAGTTCTATATGATTTCAGGTGAAACTGAGGAGACCCTTGCTGAAGGGAAAATTGTCCAAGCTACAATTCGCAGAGTGCAAGCCCAAAAGGCAATATGTGGGCTTGAATCTGGGTTAACTGGAATCCTTATGAAAGAAGATTACACAGATGACTGGAGGGATGTAGTTGAGCTATCTGACAGGCTGCATGAAGGAGACATTCTCACCTGCAAAATCAAATCAATTCAGAAGAATAGGTATCAAGTATTCCTTGTTTGTAAGGAGAGTGAAATGAGAAGTAATCGTTTACAGAATAATCTTAATCTTGACCCCTATTACCACGAAGACCGGAGCTGTCTACAGAGTGAACAAGACAAGGCCCGCAAAGAAAAAGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATAGTTCATCCACGTTTCCAGAACATTACAGCAGATGAAGCAATGGAGTTCTTGTCTGATAAAGATTTTGGAGAAAGTATTATCCGGCCTAGTTCACGTGGACCTTCATTTCTTACTTTAACTCTCAAAATCTATGATGGAGTTTATGCCCACAAAGATATAATTGAGGGTGGAAAAGAACACAAGGACATCACCAGCTTACTTCGAATTGGGAAGACCCTAAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTAATGGACCGTTATGTTGATCCCTTGGTGACCCACTTAAAGGCAATGTTAAACTATCGCAAGTTCAGGAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAGAAAGCAGAGTATCCTATGAGGATAGTCTATAGTTTTGGCATCTCTCATGAACATCCTGGTACATTTATATTAACTTACATTAGAAGCACAAATCCACACCATGAGTACATTGGTCTTTATCCAAAAGGATTCAAGTTTCGGAAAAGAATGTTTGAGGACATTGATCGGCTTGTAGCATATTTTCAGAGGCATATCGATGATCCCCAGCATGATTTAGCACCCTCCATTAGATCTGTTGCTGCTATGGTGCCAATGCGAAGCCCTGCAACTGGTGGCTCATCAGGGGCATCAGTGGGTAGCGGCTGGGGTGGTTCTAACAATGAGGGTGGCTGGAGAAGTCACTCTGGTGATGGGGATCGATCTTCTATGCCAGGTTCCAGGACAGGGCGACATGATTACAGAAACAGTGGGAATCGAGATGGCCACCCTAGTGGGCTGCCTCGTCCATATGCTGGTGGACGTGGACGTGGACGTGGGTCATATAACAGTCGAGGAAACAGCTCCAATGATGAAAGGCAGGACTCTGGTTATAGTGCATCTAGATGGGGTCCTGTTGCAAAGGATGGAGATGATGGTTTAAGCAATTTCGGAGGAGCTAAGGTTCAAAATTCCCCTGGAAGGGAAGCTTTCCCTGGTGGTTGGGGAACTGTTGGAGGTGGGGGAGGTAGTGGTTGGGGTGGGGGAGGCAGTGCCAATGACAATGCTGGCTGGGGGCATGGAGCTGGTGGTGCAAGTGATGCTGAGCGCGGAGGCTCTGGCTGGGGAAGTGGTCCAAAGAAATCTGGGAATGGATGGTCTGGAAATTCTGGCAGCGGTGGTGGTTGGTGA 4938 0.4384 MQNGSEGFPGSFMAVLNCFRDSDISVACSSTFADEVELEEDEREPVDGDGLDDEEDEDEEEGQDEYEKDGFIVDDIDEEEEQDEEEERAESDEERQRKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGQRDTEEEPSGFSDEEEFVGSGKGGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEEDEMADFIVDEEEDENGAPMRRRKLKKKKTRQAPGVSSSALQEAQELFGDVEELLQSRKQSLESREYRETRLEDEFEPIVLSEKYMTEKDDRIRELDIPERMQILEESTGPPPLDASSIDEEGNWIDGQIKGMAPWINKKDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKNPQQPDGNENWDKNEKTPTLKWHKVLWAVQDLDRKWLLLQKRKSALQAYYNKRFEEESRRVYDETRLELNQQLFESVMRSLKAAETEREVDDVDSKFNLHFPPGEVGVDEGQFKRPKRKSAYSSFSKAGLWEVASKFGRSSEQLGMILSLEKMLDELEDPKETPEEMASNFTCAMCDTPQEVLKCARHMAAVEISCEPSIRKHVRTNFIDHAVVSTCPTADGIVTIDSFHQFAWIKWLREKPLSKFEDAQWLLIQKAEEEKLLQVTIKLPEQYLEKLTNEFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARAYLTSKAKNWLLVEYGKALWNKVSLGPYQRKDNDLSSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQDRVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDGLSIVYGDESLPHLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSSLEGFLNPDEKFGMVEQIMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLHRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYTLAQELAKDVYEADGSGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASQKNRKNKRETFYDIKSELIQGFQDWRKQYEEPNQDEEFYMISGETEETLAEGKIVQATIRRVQAQKAICGLESGLTGILMKEDYTDDWRDVVELSDRLHEGDILTCKIKSIQKNRYQVFLVCKESEMRSNRLQNNLNLDPYYHEDRSCLQSEQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDFGESIIRPSSRGPSFLTLTLKIYDGVYAHKDIIEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKAEVDELLRMEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHDLAPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSNNEGGWRSHSGDGDRSSMPGSRTGRHDYRNSGNRDGHPSGLPRPYAGGRGRGRGSYNSRGNSSNDERQDSGYSASRWGPVAKDGDDGLSNFGGAKVQNSPGREAFPGGWGTVGGGGGSGWGGGGSANDNAGWGHGAGGASDAERGGSGWGSGPKKSGNGWSGNSGSGGGW 1645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 34 90 - -
Bisa03g2515 1645 Gene3D - 496 933 IPR023323 -
Bisa03g2515 1645 Pfam Acidic N-terminal SPT6 52 142 IPR028083 -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 730 900 - -
Bisa03g2515 1645 ProSiteProfiles S1 domain profile. 1128 1199 IPR003029 GO:0003676
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 33 243 - -
Bisa03g2515 1645 SUPERFAMILY RuvA domain 2-like 1014 1103 IPR010994 -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 1530 1546 - -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 912 1003 - -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 1629 1645 - -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 1494 1508 - -
Bisa03g2515 1645 CDD SH2_Nterm_SPT6_like 1250 1338 IPR035019 -
Bisa03g2515 1645 SUPERFAMILY Ribonuclease H-like 740 895 IPR012337 -
Bisa03g2515 1645 SMART rnase_8s 740 858 IPR006641 GO:0006139
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 1460 1482 - -
Bisa03g2515 1645 Pfam Holliday-junction resolvase-like of SPT6 739 895 IPR028231 -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 1348 1440 - -
Bisa03g2515 1645 SUPERFAMILY RuvA domain 2-like 911 1001 IPR010994 -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 91 110 - -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 181 216 - -
Bisa03g2515 1645 Pfam HHH domain 1015 1102 IPR041692 -
Bisa03g2515 1645 SUPERFAMILY Tex N-terminal region-like 340 719 - -
Bisa03g2515 1645 FunFam Transcription elongation factor Spt6 1007 1101 - -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 312 484 - -
Bisa03g2515 1645 Pfam SH2 domain 1217 1434 IPR035420 -
Bisa03g2515 1645 Gene3D SH2 domain 1348 1442 IPR036860 -
Bisa03g2515 1645 Gene3D SH2 domain 1236 1347 IPR036860 -
Bisa03g2515 1645 PIRSF Spt6 21 1505 IPR017072 GO:0032968
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 1236 1347 - -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 1457 1645 - -
Bisa03g2515 1645 Coils Coil 76 106 - -
Bisa03g2515 1645 Gene3D - 279 1003 - -
Bisa03g2515 1645 Gene3D - 312 495 IPR023319 -
Bisa03g2515 1645 MobiDBLite consensus disorder prediction 157 179 - -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 487 749 - -
Bisa03g2515 1645 CDD SH2_Cterm_SPT6_like 1349 1435 IPR035018 -
Bisa03g2515 1645 Pfam Helix-hairpin-helix motif 899 1000 IPR032706 -
Bisa03g2515 1645 Gene3D - 730 1120 IPR037027 GO:0006139
Bisa03g2515 1645 SUPERFAMILY SH2 domain 1253 1339 IPR036860 -
Bisa03g2515 1645 SMART S1_6 1126 1199 IPR022967 -
Bisa03g2515 1645 FunFam Transcription elongation factor spt6 1121 1209 - -
Bisa03g2515 1645 Gene3D - 1009 1101 IPR042066 -
Bisa03g2515 1645 Gene3D - 1121 1208 IPR012340 -
Bisa03g2515 1645 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 48 1501 IPR017072 GO:0032968
Bisa03g2515 1645 SUPERFAMILY Nucleic acid-binding proteins 1123 1203 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2515 Bisa-ChrBisa03 38038312 38047120 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g2515 03 38038312 38047120 Bisa03g2515 03 38038312 38047120 ECH