Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1209 ATGTCTGTATCACTATGTATGCTTTCACTTGAAGAACCCTCGTCTTTTGATGGCGCCCTTTATCTTTCTTGGACGACTTTCCCACTTGACTACTTCTGTGGATATACCTGTTTGAGTGTTTCTGTGAGCTCTGCAGTCTCACCATTTCAGCATCAGCAGCAGCATTTCCTGTGGCTTCTTCAACCTAAGAAAGAGTTTCTCTTTTCTATGGGGCACAAGCATTTGTCGGTGGCTTTATGTTTGTGGGCTTTTACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGATTCTGAGAATTGGTTTGAAGAAGAGACATCTAGATCTTAAAAGCATTCAAGCTGCCAGAGCTTTAAGAGAAGATCTGAAACCAGGCAGGCCAGTGAAAGGTACACTTTGGTATAGTGGAAATTCAGAAGATGAAGATATAGTACCTCTAAAGAATTATTTGGATGCGCAATATTATGGAGAGATTGGAATTGGTACACCCCCACAGAAATTCACTGTCATATTTGATACTGGTAGTTCCAACCTGTGGGTTCCATCATCAAAGTGCTATTTTTCAATTGCCTGCTATGTCCATAATTGGTACAAGTCAAGCAAATCCAGTACATATTCCGAGAATGGAACATCATGTGAAATACAGTATGGGTCTGGATCATTATATGGTTTTTTCAGTGAAGATAACCTTAGAGTTGGTGATTTAGTTGTTAAGCATCAGGATTTCATCGAGGCTACTAGTGAAAAAAGTCTTTCCTTTGTATTAGCTAAGTTTGATGGGATATTTGGGCTTGGGTTCCAGGAGATCTCAGTTGGGAAAGCAGTGCCAGTATGGTACAATATGGTGGACCAAGATCTTATAAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGTAAATTCAGAGTCAGAAGAAGGTGGCGAATTAGTATTTGGAGGTGTTGATCCAAATCACTTCAAAGGAAAACATACTTATGTTCCAATCACTAGAAAAGGTTACTGGCAGCTTGAAATGGGAGATTTTCTTGTTGGAGGTCTTTCAACAGGTGTTTGCGAAGGTGGATGTGCTGCTATTGTGGATTCCGGAACATCTCTGCTTGCTGGTCCAACTTCAGTTGTGACTGAAATCAACCATGCCATCGGAGCTGAAGGGATTGTAAGTTCAGAATGTAAGGAAGTTGTTTCTCAATATGGAGACATGATATGGGATCTCTTAGTATCAGGGGTGGAGCCTGATGAAGTATGTTCACAAGTTGGTTTATGCTCTGCTTATATTGATCAATCTAAGAGTACTGGGATTGAAATGGTGACTGAAAAGATCGAGAGAGGGGTATTGTCAGCTAGAGACAATGATATGTGCTCATTTTGTCAGATGGCTGTAGTTTGGGTCCAGAATCAACTAAAACGTAAGGCAACTAAGGAAAAAGTAATTAACTACGTGAATCAGCTGTGTGAGAGACTGCCAAGTCCTGGTGGAGAGTCTACCATAAGTTGTGATAGTATTTCTCAGATGCCAAACATTACTCTTACTATTGGAGATAAACCTTTCAACCTCACTCCAGAGCAGTATATTCTGAAAACTGGAGAAGGCTCTTCTGCAGTTTGCCTCAGTGGGTTTACGGCTTTTGATATTCCCCCTCCACAGGGTCCTTTATGGATTCTTGGCGATGTTTTTATGAGAGTATATCATACGGTCTTTGACTATGGCAATCTCCAACTTGGTTTCGCGGAAGCAGCGTAG 1734 0.4112 MSVSLCMLSLEEPSSFDGALYLSWTTFPLDYFCGYTCLSVSVSSAVSPFQHQQQHFLWLLQPKKEFLFSMGHKHLSVALCLWAFTCSLLPSFSSGILRIGLKKRHLDLKSIQAARALREDLKPGRPVKGTLWYSGNSEDEDIVPLKNYLDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYVHNWYKSSKSSTYSENGTSCEIQYGSGSLYGFFSEDNLRVGDLVVKHQDFIEATSEKSLSFVLAKFDGIFGLGFQEISVGKAVPVWYNMVDQDLISEKVFSFWLNVNSESEEGGELVFGGVDPNHFKGKHTYVPITRKGYWQLEMGDFLVGGLSTGVCEGGCAAIVDSGTSLLAGPTSVVTEINHAIGAEGIVSSECKEVVSQYGDMIWDLLVSGVEPDEVCSQVGLCSAYIDQSKSTGIEMVTEKIERGVLSARDNDMCSFCQMAVVWVQNQLKRKATKEKVINYVNQLCERLPSPGGESTISCDSISQMPNITLTIGDKPFNLTPEQYILKTGEGSSAVCLSGFTAFDIPPPQGPLWILGDVFMRVYHTVFDYGNLQLGFAEAA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1209 577 PRINTS Pepsin (A1) aspartic protease family signature 550 565 IPR001461 GO:0004190|GO:0006508
Bisa03g1209 577 PRINTS Pepsin (A1) aspartic protease family signature 305 318 IPR001461 GO:0004190|GO:0006508
Bisa03g1209 577 PRINTS Pepsin (A1) aspartic protease family signature 355 366 IPR001461 GO:0004190|GO:0006508
Bisa03g1209 577 PRINTS Pepsin (A1) aspartic protease family signature 159 179 IPR001461 GO:0004190|GO:0006508
Bisa03g1209 577 Pfam Eukaryotic aspartyl protease 152 576 IPR033121 -
Bisa03g1209 577 FunFam Lysosomal aspartic protease 431 576 - -
Bisa03g1209 577 SUPERFAMILY Saposin 384 486 IPR011001 -
Bisa03g1209 577 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 355 366 IPR001969 GO:0004190|GO:0006508
Bisa03g1209 577 Pfam Saposin-like type B, region 2 387 419 IPR008138 -
Bisa03g1209 577 Gene3D Acid Proteases 312 577 IPR021109 -
Bisa03g1209 577 SMART sapb_4 347 419 IPR008139 -
Bisa03g1209 577 FunFam Aspartic proteinase A1 383 486 - -
Bisa03g1209 577 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 87 575 IPR001461 GO:0004190|GO:0006508
Bisa03g1209 577 Pfam Saposin-like type B, region 1 449 486 IPR007856 GO:0006629
Bisa03g1209 577 ProSiteProfiles Saposin B type domain profile. 383 423 IPR008139 -
Bisa03g1209 577 ProSiteProfiles Saposin B type domain profile. 447 488 IPR008139 -
Bisa03g1209 577 SUPERFAMILY Acid proteases 77 576 IPR021109 -
Bisa03g1209 577 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 168 179 IPR001969 GO:0004190|GO:0006508
Bisa03g1209 577 ProSiteProfiles Peptidase family A1 domain profile. 153 574 IPR033121 -
Bisa03g1209 577 Gene3D Acid Proteases 97 311 IPR021109 -
Bisa03g1209 577 Gene3D - 383 486 - -
Bisa03g1209 577 CDD phytepsin 143 575 IPR033869 GO:0004190
Bisa03g1209 577 FunFam Lysosomal aspartic protease 139 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1209 Bisa-ChrBisa03 16516422 16522391 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g1209 03 16516422 16522391 Bisa03g1209 03 16516422 16522391 ECH