Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0683 ATGCTGGACGTCACGTCCTTGGCTGTGGCGGTGGATCCACCGATCCAGAATGTTGATGGGTCGAATAGGAAACCCGACCCGGTTTGGGAATTCCGGGAGTTTCAGCTTTTCCTGTTAAGGTTGCAGGAAGCTGTGTTCTTACTGAGCGGGAACTCTGGACGTGCTGAAGTTGCCAATATCTTATTAATGGAGAATTCATCTGAGGTACTTGGCTCAAAAGGCTTGATTAAAAAGCATGAATTTGTTAGGATCATAATTCAATGCCTATATGCATTGGGGTACAGCAATTCTGCCTCGTGTTTGGAATTGGAATCTGGTATTTCATTCAAGTCTGCAGAATTTCAGTTGCTTGGATCACAGATACTTAATGGGAATTGGGATGGTTGCATCAGCACTCTTAAACTTATAAAGGATATGATGGATGAAACTAGAGAGTCTGCTCTGTTTCTTGTCTTTAGACAGTGTCTTCTAGAGTTTTTAAGTTGTGGCCAGGATACTTTAGCTTTGGATGTATTAAGGAAACAGATCTCTGCATTACATGTGGACAAATACAAGATTCATAGCCTGGCTAGTAGCATGCTTTCCTTGAAGGATATGGAGTTAGGTTTAATAAATGGTAATGTTGTTCATGATTTGCGAAGGAAGTTGTTAACTGATTTGGAAAAATTGCTCCCTCCTCCAATAACAGTACCTGAAGGAAGGCTGGAGCATTTAGTAGAAACTACTGTTACAGCCTGGATAGATTCTTGTATGTATCACAGTTCATCAAATCCAATTTCACTTTATGAGGACCATTGTTGTGGTCGGGATCACGTTCCTACTGATACCACTCAGATCTTGACTGGGCATAAGAATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGGGAGTACCTGGCCTCTTCATCTAATGATTGTACAGCCATCATATGGAAGGTGCTGGAAGATGGAAAATTGACACTGGAACACACACTACAAGGTCACCAACGTGCTGTATCTTTTGTTGCATGGAGTCCTGATGACACCAAGTTGCTCACATGTGGGAACACAGAAGTTTTGAAGCTGTGGGATGTTGAAACAGGTACATGCAAACACACATTTGGGAGTCATGGCTTCGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAAAGCATATTGTGTGTGGCAGTTCCGACCCTGAAAAGGGCATTTGTATGTGGGATTGTGATGGAAACGAGTTAAAAGCATGGAGAGGAGTGAGGATGCCCAAAGTTCTAGATCTTTCTGTCACACCGGATGGGGAGTACCTTATCACCATATTCATGGATAAAGAGATTCGAATTTTGCAGTTGGGAACAAATGCTGAGCGAGTCATCTCAGAGGAGCACCCAATCACATCTCTTTCTGTTTCAGGAGATAGCAAGTTCTTCATTGTCAATCTCAACAGCCAGGAGATTCATATGTGGGATGTGGGTGGGGAATGGGATAAGCCATTGAGGTATAAGGGCCACAAGCAACACAAATATGTGATAAGGTCATGCTTTGGTGGATTGGATAGTTCATTCATTGCCAGTGGTAGCGAGAATTCACAGGTGTACATTTGGAATCGCAGGAACTCAAAGCCTATAGAGGTTTTATCTGGGCACTCAATGACTGTGAATTGTGTGAGCTGGAACCCAAGAAGACCAGAAATGTTGGCCTCTGCTAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTATCAAAAGAATGA 1737 0.4272 MLDVTSLAVAVDPPIQNVDGSNRKPDPVWEFREFQLFLLRLQEAVFLLSGNSGRAEVANILLMENSSEVLGSKGLIKKHEFVRIIIQCLYALGYSNSASCLELESGISFKSAEFQLLGSQILNGNWDGCISTLKLIKDMMDETRESALFLVFRQCLLEFLSCGQDTLALDVLRKQISALHVDKYKIHSLASSMLSLKDMELGLINGNVVHDLRRKLLTDLEKLLPPPITVPEGRLEHLVETTVTAWIDSCMYHSSSNPISLYEDHCCGRDHVPTDTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGKLTLEHTLQGHQRAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGSHGFVVSSCAWFPNSKHIVCGSSDPEKGICMWDCDGNELKAWRGVRMPKVLDLSVTPDGEYLITIFMDKEIRILQLGTNAERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVGGEWDKPLRYKGHKQHKYVIRSCFGGLDSSFIASGSENSQVYIWNRRNSKPIEVLSGHSMTVNCVSWNPRRPEMLASASDDYTIRIWGPSLSKE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 578 - -
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Bisa03g0683 578 FunFam WD repeat-containing protein 26 homolog 267 572 - -
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 313 IPR001680 GO:0005515
Bisa03g0683 578 SMART Lish 77 109 IPR006594 GO:0005515
Bisa03g0683 578 ProSiteProfiles LIS1 homology (LisH) motif profile. 77 109 IPR006594 GO:0005515
Bisa03g0683 578 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 110 167 IPR006595 -
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 313 - -
Bisa03g0683 578 CDD WD40 277 571 - -
Bisa03g0683 578 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 578 IPR001680 GO:0005515
Bisa03g0683 578 PANTHER WD REPEAT PROTEIN 26-RELATED 64 574 - -
Bisa03g0683 578 SMART WD40_4 532 572 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 318 357 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 360 401 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 487 529 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 273 312 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 403 443 IPR001680 GO:0005515
Bisa03g0683 578 SMART WD40_4 445 483 IPR001680 GO:0005515
Bisa03g0683 578 SUPERFAMILY WD40 repeat-like 271 571 IPR036322 GO:0005515
Bisa03g0683 578 Pfam WD domain, G-beta repeat 361 400 IPR001680 GO:0005515
Bisa03g0683 578 Pfam WD domain, G-beta repeat 534 571 IPR001680 GO:0005515
Bisa03g0683 578 Pfam WD domain, G-beta repeat 322 357 IPR001680 GO:0005515
Bisa03g0683 578 Pfam WD domain, G-beta repeat 494 529 IPR001680 GO:0005515
Bisa03g0683 578 Pfam WD domain, G-beta repeat 276 312 IPR001680 GO:0005515
Bisa03g0683 578 Gene3D - 269 575 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0683 Bisa-ChrBisa03 8941123 8952745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0683 278 431 Miscellaneous Gene Families AT5G08390 31.818 3.53e-17 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0683 03 8941123 8952745 Bisa03g0683 03 8941123 8952745 ECH