Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0310 ATGTTATCTGCTCTTTCGATGCCAGTTTCTTTAGAATGCGTGAATGTATGCATGTTACCGAGAGGAGATGGAAGCGGAAGATACGACTGTAGTGTTCTTTCATGCGCGTGGAAAGCTCCTAGGGTCCTTACTGGGTTCCTTGCGAGCACAGCTCATCCTCAGCATTGTACATCCTTGTCTTTTGGGAAAAATGGAAGAAGGAACCGGTATAATTTTGGATGTGAAGCCTTTAATGTAGCAGGTTCTTATTCAGAGGAAGCTTGCGATATTATACTTATTGGAGGATTCTCTAGATCAATCTTGTCTCAAATTGCTCACAAAAGATGGCGATTCAGTTGTTCATTTTCATCCTCTTTGGATACTGACAACAAGGCTTCCCCTGAATGGTTGTGGCAGGATCTAAAACCTGTTATCTCATACCTTTCACCTAAAGAACTGGAGTTGGTCCATAATGCTTTTTTGTTGGCATTCAGAGCTCATGATGGCCAGAGAAGACGCAGCGGTGAACCATTCATCATTCATCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGACTGGGAGTCTGTTGCTGCTGGGTTACTGCACGACACAGTCGAGGATACAAATGTTGTTACTTTTGAGAGAATTGAGGAGGAGTTTGGTGCCACGGTACGCCACATTGTGGAAGGAGAGACTAAGGTATCAAAGCTGGGCAAGTTGAAGTACAAGAATGAAAATGATTCCATTCAAGATGTAAAAGCAGAGGATCTTCGACAAATGTTCCTAGCCATGACAGAGGAGGTCCGGGTTATTATTGTCAAATTAGCAGACAGATTACATAACATGCGCACTCTTTCATATATGCCTCAACATAAACAGGCTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTAGCAAAGTTGCTTGGGATGTATCAAATTAAGTCAGAGCTAGAAAATCTATCATTCATGTACACAAAACCTGAAGATTATGCTAAAGTTAAAAGAAGAGTTGCAGAGCTGTATAAAGAACATGAGAAAGAACTGATTGAGGCAAACAAAATGTTGATGAAGAAAATCCAGGATGATCAGTTATTAGAACTTTTGACTGTGAAAACTGAAGTTCGTGCTGTGTGTAAGGAACCTTACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTCTATCAATATGATTAACCAAATTGCACAGCTTCGTATTATCATAAAACCAAAGCAATGCATTGGGGTTGGGCCTTTATGCAGTCCACAGCAGATTTGCTACCATGTGCTGGGGTTGGTCCATGGGATATGGACTCCTATTCCTAGATCTGTGAAAGATTATATTGCAACCCCCAAACCTAATGGCTACCAGAGTCTCCATACAACTGTGATTCCATTTTTATATGAGAGCATGTTTCGCTTAGAAGTTCAGATCAGAACAGAAGAAATGGATTTAATAGCTGAGAGAGGGATTGCTGCTCATTATAGTGGAAGGGCATTTGTCACTGGCTTGGTTGGAAGTGCAATGCCTAGTACTAGAAGCTCAGGAGGAATGACAGTCTGTCTCAACAATGCAAACATTGCTCTCAGAATTGGATGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCCAGGGAATTTGTTGACACTATTACCAGAGACCTGTTGGGTAGTCGTGTCTTTGTGTTTACACCCAGGGGAGAGATTAAAAATCTTCCCAGGGGTGCTACTGTTATTGACTATGCTTATATGATACACACTGAAATAGGGAACAAAATGGTAGCTGCAAAGGTCAATGGAAATCTTGTTTCTCCCTCACATGTACTTGCAAATGCAGAAGTAGTGGAGATAATTACATATAATGCACTTTCCAGCAAATCAGCCTTCCAGAGGCATAAGCAGTGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAGATTATGAAGTTTCTGAGGGAGTATGCTGCACTCGCTGCTGCTGATATAACTAAAGAAGCAATCAATGACTTTGTCACTGATTCTGAAGGGGATGGTGATTCTGGAGAATTGCTGGATGGTTCCAGTGGCATCATACCTATGTGGGAGAAAATGGTTATGAATGTTGGGAAAATATCATCCCCCAACAAAAGGGATGATATCCTCCAAAGTAAGAACGGAAGTGTTTGGATGCCTAAAGTCAATGGAAAACATAACAAGTATGTGCAACCTTTAAGTTTGAAGGGTGAAGGGGAGTTATTGCTGCAGGGAAACCATGTTGCCAAGATGATTGAAGTTAACAATCCAAGATACAAAGAAGTCCTGCCAGGTTTAGAGAGCTGGCAAGCCCAGAAAATTGCCTCTTGGCACAATATAGAAGGGCATTCCGTTCAATGGTTCTGTGTTATATGTATAGACCGAAGAGGTATCATGGCTGAGGTCACAACAGCGCTGGCCACTGCAGGCATTAGCATACGTTCCTGTGTGGCTGAGGTTGATGGAGGGAGGGGAATGGCTGTCATGTTATTTCATGCTGAAGGGAGTTTAGATAGTTTGGTGAGCGCTTGTTCTAGAGTAGATGTAATACTGGGTGTTTTAGGGTCGTCTACTGGTTGCAGCTGGCCAAGCTTGATGGGAAATAATGATAGTTGA 2646 0.4199 MLSALSMPVSLECVNVCMLPRGDGSGRYDCSVLSCAWKAPRVLTGFLASTAHPQHCTSLSFGKNGRRNRYNFGCEAFNVAGSYSEEACDIILIGGFSRSILSQIAHKRWRFSCSFSSSLDTDNKASPEWLWQDLKPVISYLSPKELELVHNAFLLAFRAHDGQRRRSGEPFIIHPVEVARILGELELDWESVAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSIQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSYMPQHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTKPEDYAKVKRRVAELYKEHEKELIEANKMLMKKIQDDQLLELLTVKTEVRAVCKEPYSIYKAVLKSKSSINMINQIAQLRIIIKPKQCIGVGPLCSPQQICYHVLGLVHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRAFVTGLVGSAMPSTRSSGGMTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPRGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREYAALAAADITKEAINDFVTDSEGDGDSGELLDGSSGIIPMWEKMVMNVGKISSPNKRDDILQSKNGSVWMPKVNGKHNKYVQPLSLKGEGELLLQGNHVAKMIEVNNPRYKEVLPGLESWQAQKIASWHNIEGHSVQWFCVICIDRRGIMAEVTTALATAGISIRSCVAEVDGGRGMAVMLFHAEGSLDSLVSACSRVDVILGVLGSSTGCSWPSLMGNNDS 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0310 881 CDD TGS_RSH 566 624 IPR033655 -
Bisa03g0310 881 ProSiteProfiles ACT domain profile. 797 868 IPR002912 -
Bisa03g0310 881 SMART RelA_SpoT_2 378 498 IPR007685 GO:0015969
Bisa03g0310 881 Coils Coil 333 360 - -
Bisa03g0310 881 Gene3D - 558 633 IPR012675 -
Bisa03g0310 881 Gene3D - 797 864 - -
Bisa03g0310 881 FunFam GTP pyrophosphokinase RelA 130 325 - -
Bisa03g0310 881 FunFam GTP pyrophosphokinase (RelA/SpoT) 557 631 - -
Bisa03g0310 881 SUPERFAMILY HD-domain/PDEase-like 134 324 - -
Bisa03g0310 881 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Bisa03g0310 881 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 877 - -
Bisa03g0310 881 Pfam HD domain 152 309 - -
Bisa03g0310 881 SUPERFAMILY ACT-like 798 849 IPR045865 -
Bisa03g0310 881 CDD ACT 800 853 - -
Bisa03g0310 881 CDD HDc 169 300 IPR003607 -
Bisa03g0310 881 Gene3D Hypothetical protein af1432 131 324 - -
Bisa03g0310 881 SMART hd_13 167 287 IPR003607 -
Bisa03g0310 881 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Bisa03g0310 881 SUPERFAMILY TGS-like 552 624 IPR012676 -
Bisa03g0310 881 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Bisa03g0310 881 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
Bisa03g0310 881 Pfam TGS domain 565 624 IPR004095 -
Bisa03g0310 881 CDD NT_Rel-Spo_like 349 488 IPR007685 GO:0015969
Bisa03g0310 881 SUPERFAMILY Nucleotidyltransferase 326 495 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0310 Bisa-ChrBisa03 4136390 4143943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0310 181 496 EF-hand Containing Proteins AT3G17470 29.755 1.14e-37 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0310 03 4136390 4143943 Bisa03g0310 03 4136390 4143943 ECH