Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0271 ATGGCTCCCTCACGTCGACAGAGCAATGGTCGATCACCTCTTGTCAATCAACAGCGCCAAATCACTTCCTTCTTCTCTAAATCCACTTCTACTTCTCCTTCTCCGATTGACTCCAAGCAAAAGCTAAGCCCTAAACCCACTACAGACCCCAGCCCTAGCCCCACCACACCTTCCCCTCGCAATTCCAAACCCAACAAATCCCTCCTTCTCATTGGCGCTTCACTAACGCCCTCTCCTCTCACCCCTCCGTTTTGCTCATCATCTGGAGATAAGCAACCCAACGGTCAAGAGGTAGTTGGGAGAAGAATCAAGGTCTATTGGCCTTTGGATAAAGCCTGGTATGAAGGTTGTGTCATATCTTTTGATGAGGTTACCGGTAAGCATTTGGTTCGATACGACGATGACGAAGAGGAAACGTTGGACATTGCCAAAGAAAAGATTGAGTGGATTCAAGAGACTGCGAAGAAACTCAAACGGCTAAGACGTCACACATTATCTCCTTTGAAGAAGATGGTGATTGAGGACGATGATGGAGCAGAGAATGAGGATGGCAAGGTAGAAGAAAGCCGTGGTGATGGTGGCGGCCATGGTGATTCTTGTGAAGATCAGAGGAACAATGAGGTAGTCGAGGATGATGAGAAATATATGAAGTTAGAGAGAGAGGAGGATGAAGAGGACATAGCAGAGGGCCCTAAAGAAAAGGGAAGTGGGAAGGTTGAGCCCCGGAAGCGGAAAGTAGGCGAAGGAGAGAATTTGGGACCTGCCAAAAAGAGCAAGAGGGGAGGGGAAGTTGTTAAACAGGCATCTAATGGCATTGACAATATTGCAACTGGTGATGCATCTGAAAGATTTGCTGCCCGTGAAGCTCAGAAATTTCGATTCCTTAGAGAAAATCGTAGGGATGCCAAAAGAAGACTTCCGGGAGATGAAAATTATGATCAAAGAACTCTATACTTGCCTCCTGATTTCTTGAAGAGTTTGTCAGGTGGCCAGAGACAATGGTGGGAATTCAAGTCAAAGAATATGGACAAAGTTCTATTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAAATGGATGCACATGTAGGAGTGAAAGAGCTCGACTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCAGAGAGGAATTTCTCAATGAATGTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTAGTAGAGCAGACTGAAACACCTGAACAGCTAGAGCTTCGTCGAAAAGAGAAGGGATCTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTGGTTACAAAAGGAACATTAACTGATGGCGAGTTGCTGTCGGCAAACCCTGAAGCTTCGTATTTGATGGCATTGATTGAACACCACCAGAATGAAGCAAATGAAACTTCAGGGCGCACTTATGGTGTTTGTGTTGTTGATGTTGCCACAAGCAGAGTTATTCTTGGACAGTTTAAGGATGATTCAGAGTGCAGTGCCCTCTGCTGTATCTTGTCTGAGCTCAGGCCAGTTGAAATTGTGAAACCAGCTAAAATGCTCAGTGCTGAAACAGAGAGAATACTGCTGAAGCATACAAGAAATCCTCTGGTGAATGAATTAGTTCCAATTGTGGAGTTCTGGAGTGCAGAGAAAACTGTTGATGAAGTGAAGAAAATCTACAGGCTTACTAATGATTCTGTTGTTGACAATGATGGGTTAGGCTGCCTGCCTGATGTTTTGTTGGAGTTGGTGAAAGCGGGTGATAATAGTAGAAGTGCACTTTCAGCACTTGGTGGTGCGCTCTATTATCTGAGACAGGCTTTCTTAGATGAGACACTGCTTAGATTTGCACGGTTTGAGTTACTTCCATGTTCTGGTTTCAATGATCTTGCTTCAAAACCATACATGGTTCTTGATGCTGCAGCCTTGGAGAATCTTGAGATTTTTGAGAATTGCAGAAACGGAGATTCTTCAGGGTATGCTTACCATTTGATGATCATTGGTGTTAATGCACCCTTATCACTAGAATTTCGGAAAGCATTAGCAAAGCTACCAGACATGGAGCGTTTGCTTGCACGAATCTTCTCTTGCAGTGAAGCTAGTGGAAGGAATGCTTCTAAAGTGATTCTGTATGAGGATGCATCAAAGAAACAACTGCAAGAGTTTATTTCGGCCCTCCGTGGTTGCGAACTAATGGCAAAAGCATGTGCTTCGCTTAGTGTCATTTTGAATGATGTTGATTCCAAACAGCTTCATCATCTGCTAACACGTGGCGAAGATCTTCCTGATGTCTGTACGCATCTAAACCACTTTAAGGATGCCTTTGATTGGGTGGAAGCTAATAACTCTGGACGAATAATACCTCATGAAGGAGTTGATATTGAGTATGACTCAGCCTGTAAAACAGTTAAGGAGGTTGAATCTAATTTATCAAAACATCTCAAGGAACAGAGGAAATTAATTGGAGACAACTCAATCACTTATGTCACTGTTGGAAAGGAGGCATATCTATTGGAAGTGCCAGAAAGTTTGCGAGGAAGTATTCCTCGGGATTATGAATTACATTCATCCAGAAAAGGCTTCTTCAGGTATTGGACTCCAGATATTAAAAAGTTCTTGAGGGAGCTTGCCCAAGCTGAATCGGAAAAGGAGTCCTCATTGAAAAGTATATTGCAGAGATTGATTGGGCGTTTTTGTGAACATCACACTAAGTGGAGACAGTTGGTATTTGCAACTGCTGAGCTGGATGTTTTGATCAGTTTAGCTATTGCTAGTGACTATTATGAAGGACTGACATGCCAACCAAAAATTTTAGGAACTTTATATGAAAAAGAAGCTCCATGCCTTTCTGCTAAAAGTTTGGGACACCCAGTGCTTAGGAGTGACTCTTTGGGCAAGGGTACTTTTGTACCCAATGATATAACCATTGGTGGTCCATATCAGGCCAGCTTCATACTTCTAACTGGCCCTAATATGGGTGGAAAGTCTACTCTTCTTCGCCAAGTTTGCTTGGCTGTAATTTTGGCCCAGGTAGGGGCTGATATCCCGGCGGAAAGTTTTGATCTATCCCCTGTGGATAGAATTTTTGTTCGAATGGGTGCCAAGGACAACATCATGGCAGGCCAAAGTACTTTTCTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACACGTAATTCATTGGTGGCTTTGGATGAGCTTGGACGTGGGACCTCAACTTCTGATGGGCAAGCAATTGCGGGATCGGTACTTCAACATCTCGTGCAGAAGGTGCAGTGTCGTGGATTGTTTTCAACTCATTATCACCAATTGGCTGTAGATTTCAACAAAGATCCAAAGGTCTTTCTCTGCCATATGGCGTGCCAAGTCGGTAATGGAACTGTGGGTGTGGATGAAGTCACATTTCTTTATAGGCTGACCCCTGGTGCCTGCCCTAAGAGCTATGGAGTTAATGTTGCTCGAATAGCTGGACTTCCCGTCTCTGTACTTCAAAAGGCCGCTGTGAAGTCCAGAGAATTTGAGGCTATATATGGTAAATGCAGAAAGGCATATTCTGAAAACGACTCTTCCGATGAAAGTTGGGTGGATGAGATGGTAGTAGTCTTACGAAAATGGACCAATGCTACTACGAACTTGAGTTGCCGGGAGAACATTTGCAGCGGTTCCCTAGCTGAACTTCAGAGTAAAGCAAGAGAACTCCTGCAGCATCATTAA 3720 0.4371 MAPSRRQSNGRSPLVNQQRQITSFFSKSTSTSPSPIDSKQKLSPKPTTDPSPSPTTPSPRNSKPNKSLLLIGASLTPSPLTPPFCSSSGDKQPNGQEVVGRRIKVYWPLDKAWYEGCVISFDEVTGKHLVRYDDDEEETLDIAKEKIEWIQETAKKLKRLRRHTLSPLKKMVIEDDDGAENEDGKVEESRGDGGGHGDSCEDQRNNEVVEDDEKYMKLEREEDEEDIAEGPKEKGSGKVEPRKRKVGEGENLGPAKKSKRGGEVVKQASNGIDNIATGDASERFAAREAQKFRFLRENRRDAKRRLPGDENYDQRTLYLPPDFLKSLSGGQRQWWEFKSKNMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEASYLMALIEHHQNEANETSGRTYGVCVVDVATSRVILGQFKDDSECSALCCILSELRPVEIVKPAKMLSAETERILLKHTRNPLVNELVPIVEFWSAEKTVDEVKKIYRLTNDSVVDNDGLGCLPDVLLELVKAGDNSRSALSALGGALYYLRQAFLDETLLRFARFELLPCSGFNDLASKPYMVLDAAALENLEIFENCRNGDSSGYAYHLMIIGVNAPLSLEFRKALAKLPDMERLLARIFSCSEASGRNASKVILYEDASKKQLQEFISALRGCELMAKACASLSVILNDVDSKQLHHLLTRGEDLPDVCTHLNHFKDAFDWVEANNSGRIIPHEGVDIEYDSACKTVKEVESNLSKHLKEQRKLIGDNSITYVTVGKEAYLLEVPESLRGSIPRDYELHSSRKGFFRYWTPDIKKFLRELAQAESEKESSLKSILQRLIGRFCEHHTKWRQLVFATAELDVLISLAIASDYYEGLTCQPKILGTLYEKEAPCLSAKSLGHPVLRSDSLGKGTFVPNDITIGGPYQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADIPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAGSVLQHLVQKVQCRGLFSTHYHQLAVDFNKDPKVFLCHMACQVGNGTVGVDEVTFLYRLTPGACPKSYGVNVARIAGLPVSVLQKAAVKSREFEAIYGKCRKAYSENDSSDESWVDEMVVVLRKWTNATTNLSCRENICSGSLAELQSKARELLQHH 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0271 1239 PIRSF Msh6 663 1221 IPR017261 GO:0006298|GO:0030983
Bisa03g0271 1239 PIRSF Msh6 1 668 IPR017261 GO:0006298|GO:0030983
Bisa03g0271 1239 Pfam MutS domain I 330 443 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Pfam MutS domain II 453 606 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Gene3D - 674 921 - -
Bisa03g0271 1239 SMART mutATP5 981 1173 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 FunFam DNA mismatch repair protein 285 448 - -
Bisa03g0271 1239 Coils Coil 868 888 - -
Bisa03g0271 1239 CDD Tudor_Agenet_AtEML-like 99 149 - -
Bisa03g0271 1239 SUPERFAMILY DNA repair protein MutS, domain III 638 927 IPR036187 -
Bisa03g0271 1239 SUPERFAMILY DNA repair protein MutS, domain II 449 650 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Gene3D DNA repair protein MutS, domain I 286 447 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 1 97 - -
Bisa03g0271 1239 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 331 1191 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bisa03g0271 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 945 1176 IPR027417 -
Bisa03g0271 1239 Gene3D MutS, connector domain 452 635 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 SMART DNAend 624 961 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Pfam MutS family domain IV 790 881 IPR007861 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Pfam MutS domain III 670 921 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Gene3D - 85 148 - -
Bisa03g0271 1239 Gene3D - 766 897 - -
Bisa03g0271 1239 Coils Coil 140 160 - -
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 1 46 - -
Bisa03g0271 1239 FunFam DNA mismatch repair protein 932 1205 - -
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 60 94 - -
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 183 216 - -
Bisa03g0271 1239 SUPERFAMILY DNA repair protein MutS, domain I 316 439 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Pfam MutS domain V 985 1175 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bisa03g0271 1239 Gene3D - 932 1207 IPR027417 -
Bisa03g0271 1239 FunFam DNA mismatch repair protein 766 897 - -
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 171 266 - -
Bisa03g0271 1239 MobiDBLite consensus disorder prediction 227 263 - -
Bisa03g0271 1239 SUPERFAMILY Tudor/PWWP/MBT 98 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0271 Bisa-ChrBisa03 3622622 3630942 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0271 03 3622622 3630942 Bisa03g0271 03 3622622 3630942 ECH