Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3595 ATGGCTCCATTTCCGTCTGAGAACGGTGTCGAAGGAGACGATGAGAGAGAGGAGGAAGACAAGGAGGAAGAGGAGGAAGATGAGGAAGAGGAAGAGGAGCCGAGGCTTAAGTATCAGAGAATGGGAGGCAGCATACCTTCGCTGCTAGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCCGAGCGGATGGTTGCACTCGGCACCCAGGGGGGCACTGTTCATATCCTTGATTTTCTTGGGAACCAGGTGAAAGAGTTCGCTGCTCATGCTGCTGTTGTTAAAGACCTTAGCTTCGACCTAGCAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCTGTTGTAATAAACAGCCTATTCACTGGTAAGAAAATGAAATTTGAGTATCATCACCCAATGAAGGCTATTGCCCTGGACCCAAATTATTCTAGTAAAACATCAAGGAGATTTGTTGCGGGTGGTTTAGCTGGTCATTTATATCTTAATTCAAAGACATGGTTAGGCTATCGAGATCAGGTTTTGCACTCCGGTGAAGGTCCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCATGGGCAAATGATGCAGGAGTGAAGGTTTATGATACAGCCAATGACCAGCGTATAACATTTATTGAAAAACCACGAGGGATCCCACACCCTGAGCTTTTGCGTCCCCACTTGGTTTGGCAGGATGACACCCTCTTGGTAATTGGTTGGGGAACATCTATCAAAATTGCATCAATAAGAGCGAGCCACAATAAAGTAGCCAATGGGATGAAAGGGCAAGTCCCAATGTCTCGTATGAACCTGGTGGATATTGTGGCATCTTTTCAAACTACCCATTTCATCTCAGGAATTGCCCCCTTTGGTGATGCCCTGGTTGTTCTTGCTTATATTCCTGAAGAAGATGGAGAAAAGGATTTTAGTAGCACTGCTCTTTCACAGCAGGGTAATGCACAGAGACCAGAAGTACATATTGTAACATGGAATAATGATGAACTTTCAACAGATGCTCTACCGGTACACAGCTTTGAGCATAACAAAGCAAAGGACTATTCCCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAACCAAGGGATACTGAAGATCATATTGCATGGCTTCTTCAACATGGGTGGCATGAAAAAGCGTTGGCTGCAGTTGAATCTAGTCAAGGAAAGAGTGAACTCCTTGATGAGGTGGGATCTAGGTACCTTGATCATCTAATTGTCGAAAGAAAATATTCTGAAGCAGCTTTGTTGTGTCCCAAGTTGCTGCGCGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTTCCTGTTTTGGTTCCCTATATGCCTCCTGTAAACCCCAGACTGCGTGACACCGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCATAAGGATCTCTTATCCACTGTCAAATCCTGGCCTTCTGAAATTTATTCTGCATTGCCAGTTATTTCAGCCATTGAACCTCAGCTTAATACTTCATCCATGACGGATTCACTCAAGGAGGCATTGGCTGAGTTATATGTAATTGATGGGAAATATGAGAGAGCCTTTTCATTGTACGCCGATCTCATGAAACCAGAAATATTTGACTTCATTGATAAATATAATCTACATGATGCAGTTCAAGAAAAGGTTGTCCAACTGATGATGGTAGATTGCAAGCGTGCAGTTCCTCTACTAATACAAAACAGGGACTCAACAAGTCCAGCTGAAGTGGTGAAGCAACTTCTAAATGCCAATAATAAGTGTGACCGTGGATATTTATTACATTTATATCTTCATTCATTATTTGAAGTAAATCCACATGCTGGGAAGGACTTTCATGATATGCAGGTAGAACTTTATGCAGACCATGACCCAAGGATGCTGGTACCATTTCTTCGTAGCAGTCAACACTTTACCCTTGAGAAGGCATATGAAATTTGCGTCAAAAGAGGTCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCAAAGCAAGCCTTATCTATTATTATTAATAAATTAGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCAAGACGATGAACTTTGGGAAGAACTAATCAAGCTATGTCTACGCAAACCTGAAATGGTGGGCATCCTATTGGAACACTCAGTTGGAAATCTTGATCCCCTCTATATCGTAAATAAGGTTCCCGATGGTTTAGAAATACCTCAACTCAGGGATCGGCTGGTTAAAATTATCAGTGGTTACAGGATTGAAACATCACTTAGACATGGATGCAATAATATTCTTAAGACGGATCGTGTCAACCTTTTAGTTAAGTATTACAAAGAGGCGAGGCATGGAATTTATCTAAGTAATGAAGATAATCAGCCACGGGCTAAAAGGAGTGACATGCATTCTTCTCAGATGGTTGAGAAATCTCCAAGTCCGAGAACCGTGGAGGTGAAATCAAAGACCAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCTTTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCACGCTTATCACTCAACTTGTCTGATGCATTCCTCCTACACTAGTAGTAGCAATAAAGAGATTGAAGCCACTTCTGGAGAGGCAGAAACTAATGATGTTTACAATGGTTATGTGGATGATGATAGCAATGATGAAGAAGCCGAGATGGGTGGCCCTCGTATGCGTTGTGTATTGTGTACTACTGCTGCTGGTTGA 2850 0.4298 MAPFPSENGVEGDDEREEEDKEEEEEDEEEEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMVALGTQGGTVHILDFLGNQVKEFAAHAAVVKDLSFDLAGEYIGSCSDDGSVVINSLFTGKKMKFEYHHPMKAIALDPNYSSKTSRRFVAGGLAGHLYLNSKTWLGYRDQVLHSGEGPIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGIPHPELLRPHLVWQDDTLLVIGWGTSIKIASIRASHNKVANGMKGQVPMSRMNLVDIVASFQTTHFISGIAPFGDALVVLAYIPEEDGEKDFSSTALSQQGNAQRPEVHIVTWNNDELSTDALPVHSFEHNKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVESSQGKSELLDEVGSRYLDHLIVERKYSEAALLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPPVNPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSEIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGKYERAFSLYADLMKPEIFDFIDKYNLHDAVQEKVVQLMMVDCKRAVPLLIQNRDSTSPAEVVKQLLNANNKCDRGYLLHLYLHSLFEVNPHAGKDFHDMQVELYADHDPRMLVPFLRSSQHFTLEKAYEICVKRGLLREQVFILGRMGNSKQALSIIINKLGDIEEAVEFVTMQQDDELWEELIKLCLRKPEMVGILLEHSVGNLDPLYIVNKVPDGLEIPQLRDRLVKIISGYRIETSLRHGCNNILKTDRVNLLVKYYKEARHGIYLSNEDNQPRAKRSDMHSSQMVEKSPSPRTVEVKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHAYHSTCLMHSSYTSSSNKEIEATSGEAETNDVYNGYVDDDSNDEEAEMGGPRMRCVLCTTAAG 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3595 949 Gene3D - 6 272 IPR015943 GO:0005515
Bisa02g3595 949 SUPERFAMILY RING/U-box 864 902 - -
Bisa02g3595 949 Gene3D Tetratricopeptide repeat domain 542 809 IPR011990 GO:0005515
Bisa02g3595 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 824 904 IPR013083 -
Bisa02g3595 949 Pfam Region in Clathrin and VPS 604 747 IPR000547 GO:0006886|GO:0016192
Bisa02g3595 949 SUPERFAMILY WD40 repeat-like 51 251 IPR036322 GO:0005515
Bisa02g3595 949 SMART CLH_2 604 751 IPR000547 GO:0006886|GO:0016192
Bisa02g3595 949 MobiDBLite consensus disorder prediction 1 39 - -
Bisa02g3595 949 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 921 IPR045111 GO:0006623
Bisa02g3595 949 Coils Coil 12 32 - -
Bisa02g3595 949 FunFam Vacuolar protein sorting-associated protein 41 homolog 6 277 - -
Bisa02g3595 949 MobiDBLite consensus disorder prediction 11 32 - -
Bisa02g3595 949 CDD RING-H2_Vps8 863 897 - -
Bisa02g3595 949 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 604 751 IPR000547 GO:0006886|GO:0016192
Bisa02g3595 949 PIRSF Vps41 4 906 IPR016902 GO:0034058|GO:0046907
Bisa02g3595 949 SMART ring_2 865 944 IPR001841 -
Bisa02g3595 949 MobiDBLite consensus disorder prediction 826 856 - -
Bisa02g3595 949 FunFam Vacuolar protein sorting-associated protein 41 homolog 545 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3595 Bisa-ChrBisa02 88339312 88349594 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3595 02 88339312 88349594 Bisa02g3595 02 88339312 88349594 ECH