Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3516 ATGCTAAAACGGAAGAGAGAAGGTCTCTGGAACCGCCGATTACCGATGGCGATTCTTTACGCTCTGGTAGCGAGAGGAACGGTGGTTCTGGCGGAGTTCAGCGCCGTCTCCGGCAATACGGGCGCCGTGGTTCGCCGGATTCTGGAGAAGCTGCCGGCTGAAGCCGATTCCAGGCTTTGCTTCTCTCAGGATCGTTATATCTTTCACATACTCCGATCCGATGGCCTCACCTATCTCTGCATGGCCAACGACACCTTTGGAAGGAGAATTCCTTTTGCTTACTTGGAAGATATCCAAATGAGATTCATGAAGAACTATAGCAGAGTAGCCCAATATGCACCTGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTTTCAAGTAGTTCTAGTGCAGATACCCTCAACCGTGTGAGGAGTGAAGTTAGTGAGATTCGTACTATCATGGTGGAAAATATTGAGAAAATTTTGGAGAGAGGTGACCGGATTGAGCTTCTTGTCGATAAGACAGCAACAATGCAAGACAGTGCATTCCACTTTAGGAAACAATCCAAGCGTCTTCGACGAGCTCTCTGGATGAAAAATGCCAAACTCTTGGCACTATTGACATTCTTGATTCTTCTGTTTCTGTACTTTATTATCGCTGCTTGTTGTGGAGGCATCACTTTACCTTCCTGCAGATCCTGA 708 0.4605 MLKRKREGLWNRRLPMAILYALVARGTVVLAEFSAVSGNTGAVVRRILEKLPAEADSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFAYLEDIQMRFMKNYSRVAQYAPAYAMNDEFSRVLHQQMEFFSSSSSADTLNRVRSEVSEIRTIMVENIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTFLILLFLYFIIAACCGGITLPSCRS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3516 235 Gene3D - 139 224 - -
Bisa02g3516 235 FunFam Vesicle-associated membrane protein 714 16 139 - -
Bisa02g3516 235 Gene3D Longin domain 10 138 - -
Bisa02g3516 235 CDD Longin 19 133 IPR010908 -
Bisa02g3516 235 ProSiteProfiles Longin domain profile. 22 126 IPR010908 -
Bisa02g3516 235 SMART Longin_2 43 125 IPR010908 -
Bisa02g3516 235 SUPERFAMILY SNARE fusion complex 137 202 - -
Bisa02g3516 235 ProSitePatterns Synaptobrevin signature. 159 178 IPR001388 GO:0016020|GO:0016192
Bisa02g3516 235 SUPERFAMILY SNARE-like 18 133 IPR011012 -
Bisa02g3516 235 Pfam Regulated-SNARE-like domain 45 123 IPR010908 -
Bisa02g3516 235 PRINTS Synaptobrevin signature 146 165 IPR001388 GO:0016020|GO:0016192
Bisa02g3516 235 PRINTS Synaptobrevin signature 202 221 IPR001388 GO:0016020|GO:0016192
Bisa02g3516 235 PRINTS Synaptobrevin signature 166 185 IPR001388 GO:0016020|GO:0016192
Bisa02g3516 235 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 141 201 IPR042855 -
Bisa02g3516 235 PANTHER SNARE PROTEINS 16 221 - -
Bisa02g3516 235 CDD R-SNARE 140 199 - -
Bisa02g3516 235 FunFam Vesicle-associated membrane protein 7 139 224 - -
Bisa02g3516 235 Pfam Synaptobrevin 139 226 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3516 Bisa-ChrBisa02 86785437 86791285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3516 16 235 Miscellaneous Gene Families AT5G22360 85.068 3.39e-141 392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3516 02 86785437 86791285 Bisa02g3516 02 86785437 86791285 ECH