Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1562 ATGTCGAAGCTTCTCGAAGTTGATCAAATCAAGCAATTGAGAGATGTGTTTGCTCGATTCGACATGGATTCCGACGGCAGCCTGACCGTGCTCGAGCTCGCCGCGCTCCTCCGGTCGCTCGGGCTCAAGCCCACCGGCGACCAGATCCACGAGCTCTTAGCCAACGTGGACTCCAACGGCAACGGCACCGTGGAGTTCGACGAATTGGTGAGAGCCATAATGCCAGAGATGAAGGAAGAGGTAGTGGTGAATCAAGAACGGCTCCTGGAGGTCTTCAAGTGCTTCGATCGCGACGGCAATGGCTTTATATCGGCGGCGGAGTTGGCCAGAGCGATGGCCAAAATGGGCCAGCCTCTCACGTATCGAGAGCTCACGCAGATGATCAGAGACGCTGACGTGGACGGCGACGGCGTGATCAGCTTCAGTGAGTTTGCCACTGTAATGGCTAGGTCGGCCTCCGATTTCTTAGGCCTTGAATTGCCGTGA 486 0.5638 MSKLLEVDQIKQLRDVFARFDMDSDGSLTVLELAALLRSLGLKPTGDQIHELLANVDSNGNGTVEFDELVRAIMPEMKEEVVVNQERLLEVFKCFDRDGNGFISAAELARAMAKMGQPLTYRELTQMIRDADVDGDGVISFSEFATVMARSASDFLGLELP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1562 161 CDD EFh 12 74 IPR002048 GO:0005509
Bisa02g1562 161 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Bisa02g1562 161 SMART efh_1 87 115 IPR002048 GO:0005509
Bisa02g1562 161 SMART efh_1 48 76 IPR002048 GO:0005509
Bisa02g1562 161 SMART efh_1 123 151 IPR002048 GO:0005509
Bisa02g1562 161 SMART efh_1 12 40 IPR002048 GO:0005509
Bisa02g1562 161 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Bisa02g1562 161 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Bisa02g1562 161 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Bisa02g1562 161 SUPERFAMILY EF-hand 5 150 IPR011992 -
Bisa02g1562 161 Gene3D - 2 79 - -
Bisa02g1562 161 CDD EFh 87 149 IPR002048 GO:0005509
Bisa02g1562 161 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Bisa02g1562 161 Gene3D - 80 157 - -
Bisa02g1562 161 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Bisa02g1562 161 PANTHER CALCIUM BINDING PROTEIN 84 148 - -
Bisa02g1562 161 Pfam EF-hand domain pair 11 73 IPR002048 GO:0005509
Bisa02g1562 161 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Bisa02g1562 161 FunFam probable calcium-binding protein CML18 79 155 - -
Bisa02g1562 161 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Bisa02g1562 161 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Bisa02g1562 161 FunFam Probable calcium-binding protein CML15 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1562 Bisa-ChrBisa02 27465972 27466457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1562 8 160 EF-hand Containing Proteins AT1G18530 74.510 1.37e-85 246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g1562 02 27465972 27466457 Bisa02g1562 02 27465972 27466457 ECH