LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g1305	ATGCTTTATCATCTTGGCATGGCTTGGGATTTACGCTGGAGTGCTTCTCAACATAAAAGCTCAAAGTTCTGTCTGGAAGAGCAAATTGTGTCTCTAGAGCCTGTAATTCCTTCCACTGAGCAGTTGTCATGGCTGAATATGGATTGGTGCTCAATATTGGAACGGATGCAGCTGCATATGAATCTGTTGGAACCATTTATAGCATTTAGGCGAGTTCTACTTCAAATTTTAAGTTGCAGAGATTGTATGTTGCAACATCTTCTGCAATCTGCCTCCACTCTTCGCAAGGGTTCTAGGTTCTCTCAAGCAGCTGCTGCTTTGCACCAGTTTAAGTTCCTTTCTGTTGAAACGAAAGGGCAATCTTCACCCATGTATTGGCTTGGAAGGCTTGAAGAAGCAAAGCTTTTGCGTGCTCAAGGTCAACATGAGATGGCTATCAACCTTGCAATGTATATCTCACAGAACTATGGGCCTAATGAGGAGGCTTCAGATGTGTATCGGTTGATTGGGAAGTGGCTGGCAGAAACCAGATCTAGCAACTCTAGAACAATTTTAGAGAAGTATTTGAAACCCTCAGTCTCAATTGCTGAGGATGTGAACATTACTGACAAGAAGTCCATTGAACGAAAATGTCAGACTCATTTTCATCTTGCACACTATGCTGATGCGCTATTTAGAAGCCATGAGGAAAGACTTAACTCTAGTGAGTGGCAAGCGGCAATGCAATTAAGGAAGCATAAGACAGTAGAGTTGGAAGCACTTATAAAAAGATTAAGGAGCTCAAAAAAGGGGGAAAAGACTGACTATTCCTTGAAAATACAAGAACTACAAAAACAAGTTGCAATGGACAAGGAAGAGGCTCAGAAATTGCAGGATGACCGTGACAATTTTCTTGGCCTGGCTTTGGAGGGATATAAACGTTGTTTAGTCACAGGCAACAAGTATGATGTGAGAGTGGTGTTTCGTCTAGTTTCCTTGTGGTTCAGTCTCTCTCCTCGAAAAAATGTCGTGGATAGTATGCGTAGCACAATTAATGAGGTTCAATCATTTAAATTCATACCATTGGTATACCAAATTGCCTCTAGAATGGGCAGCTCAAAGGATGGTCAGGGACCTTGTAATTTCCAGTCTGCATTGGTATCTATCGTGAAGAAAATGGCCATTGATCATCCATACCATACAATACTTCATCTTCTGGCTCTCGCAAATGGTGACCGTATCAAGGACAAACAGCGTAGTAGAAGTTCATTTGTTGTTGATATGGACAAAAAGCTTGCAGCAGAAAACCTTCTACATGAGTTATCATCTTATCATGGAGCTATTATAAAACAAATGAGGCGAATGGTGGAGATTTATATCAAACTTGCTGAAATGGAAACAAAGAGAGAGGATACCAATAAAAAGATGATGCTACCAAGAGAATTACGCAGTGTCTCAGAACTGGAACTAGTACCTGTGGTGACTGCTACTGTTCCACTTGACTATAGTTGTCAGTATCAAGAGGGAACTTTTCCTTATTTCAAAGGATTAGCAGATTCAGTCATGATAATGAATGGTATAAATGCTCCAAAAGTGGTTGAGTGCCTGGGATCTGATGGTTGCAAGTATCGACAACTTGCAAAATCTGGAAACGACGACCTAAGGCAGGATGCTGTAATGGAACAATTCTTTGGTTTAGTTAACACATTCTTGAGGAACCACCGAGATACATGGAAAAGAAGGTTGGGTGTACGTACCTACAAGGTTGTTCCTTTTACACCAAGTGCCGGTGTTCTTGAGTGGGTTAATGGCACTCTTCCTCTTGGTGAATATCTTATAGGAAGCATGAGAAATGGTGGTGCCCACGGTCGATATGGAATAGGGGATTGGTCATTTCTCAAATGCCGGGAACACTTAGCAAATGAAAGGGACAAGCGCAAGGCATTCCAAGAAGTTTGCAAGAATTTCAGGCCTGTTATGCATAATTTTTTCTTAGAGAGATTTTCAAAGCCGGCAGAGTGGTTTGAGAAGAGACTAGCTTACACACGAAGTGTAGCTGCTAGTTCTATGGTGGGTTATATAGTTGGCCTCGGAGATCGACATTCAATGAATATTTTAATTGATCAGGCCACTGCTGAGGTTGTTCACATAGATCTTGGTGTTGCTTTTGAACAGGGTTTGATGCTCAAGACTCCAGAGCGGGTTCCATTTAGGCTTACAAGAGACATAATTGATGGAATGGGTGTGACTGGAGTGGAGGGGGTTTTCCGAAGATGTTGCGAGGAAACTGTGTGTGTCATGCGAACAAACAAAGAAGCATTGTTGACGATTGTTGAAGTTTTTATCCATGATCCTCTTTATAAGTGGGCTTTATCTCCTCTGAAAGCCTTGCAGCGACAAAAAGAAACAGATGATGACGTGGATACAACATTCATGGAACCTCAAGATGATTATGAAGGAAATAAGGATGCTGCACGTGCACTTCTGCGTGTCAAGCAAAAGCTGGACGGATATGAAGAAGGAGAAATGCGAAGTGTGCATGGGCAGGTTCAACAACTCATTCAAGATGCAATTGATCCTGAGAGACTCTGTCAAATGTTTCCCGGTTGGGGAGCCTGTTTGAGTGCAATGGGTGAGGAAAAGCACTACGTGCCCTACTTGCAGATGAGTGAAGAGCTAATGGGCTAG	2667	0.4218	MLYHLGMAWDLRWSASQHKSSKFCLEEQIVSLEPVIPSTEQLSWLNMDWCSILERMQLHMNLLEPFIAFRRVLLQILSCRDCMLQHLLQSASTLRKGSRFSQAAAALHQFKFLSVETKGQSSPMYWLGRLEEAKLLRAQGQHEMAINLAMYISQNYGPNEEASDVYRLIGKWLAETRSSNSRTILEKYLKPSVSIAEDVNITDKKSIERKCQTHFHLAHYADALFRSHEERLNSSEWQAAMQLRKHKTVELEALIKRLRSSKKGEKTDYSLKIQELQKQVAMDKEEAQKLQDDRDNFLGLALEGYKRCLVTGNKYDVRVVFRLVSLWFSLSPRKNVVDSMRSTINEVQSFKFIPLVYQIASRMGSSKDGQGPCNFQSALVSIVKKMAIDHPYHTILHLLALANGDRIKDKQRSRSSFVVDMDKKLAAENLLHELSSYHGAIIKQMRRMVEIYIKLAEMETKREDTNKKMMLPRELRSVSELELVPVVTATVPLDYSCQYQEGTFPYFKGLADSVMIMNGINAPKVVECLGSDGCKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGVLEWVNGTLPLGEYLIGSMRNGGAHGRYGIGDWSFLKCREHLANERDKRKAFQEVCKNFRPVMHNFFLERFSKPAEWFEKRLAYTRSVAASSMVGYIVGLGDRHSMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEETVCVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDVDTTFMEPQDDYEGNKDAARALLRVKQKLDGYEEGEMRSVHGQVQQLIQDAIDPERLCQMFPGWGACLSAMGEEKHYVPYLQMSEELMG	888

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g1305	888	Pfam	Phosphatidylinositol 3- and 4-kinase	543	783	IPR000403	-
	Bisa02g1305	888	FunFam	Serine/threonine-protein kinase ATM	641	831	-	-
	Bisa02g1305	888	CDD	PIKKc_ATM	507	784	IPR044107	GO:0004674\|GO:0006281\|GO:0006974
	Bisa02g1305	888	ProSiteProfiles	FATC domain profile.	835	867	IPR003152	GO:0005515
	Bisa02g1305	888	ProSiteProfiles	Phosphatidylinositol 3- and 4-kinases catalytic domain profile.	510	820	IPR000403	-
	Bisa02g1305	888	SMART	pi3k_hr1_6	537	831	IPR000403	-
	Bisa02g1305	888	FunFam	Serine/threonine-protein kinase ATM	436	595	-	-
	Bisa02g1305	888	ProSitePatterns	Phosphatidylinositol 3- and 4-kinases signature 2.	677	697	IPR018936	GO:0016301
	Bisa02g1305	888	Coils	Coil	266	293	-	-
	Bisa02g1305	888	Gene3D	-	436	595	-	-
	Bisa02g1305	888	SMART	FATC_2	835	867	IPR003152	GO:0005515
	Bisa02g1305	888	Pfam	FATC domain	838	865	IPR003152	GO:0005515
	Bisa02g1305	888	ProSiteProfiles	FAT domain profile.	1	404	IPR014009	-
	Bisa02g1305	888	PANTHER	SERINE/THREONINE-PROTEIN KINASE ATM	1	866	IPR038980	GO:0004674\|GO:0006974
	Bisa02g1305	888	SUPERFAMILY	Protein kinase-like (PK-like)	443	796	IPR011009	-
	Bisa02g1305	888	Gene3D	-	641	829	IPR036940	-
	Bisa02g1305	888	ProSitePatterns	Phosphatidylinositol 3- and 4-kinases signature 1.	540	555	IPR018936	GO:0016301

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g1305	Bisa-ChrBisa02	22248986	22277977	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g1305	653	793	Lipid Metabolism Gene Families	AT5G09350	24.503	3.80e-08	55.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa02g1305	02	22248986	22277977	Bisa02g1305	02	22248986	22277977	ECH