Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g4004 ATGGCTAGTGATTCTGCTGTAATGTCCAATGGCAATGTAAACTTACAACCTGAGCGACAGAGGACTTACCAAGTGGTTGTGGCTGCTACCCGGGATATGGGAATTGGTAAAGATGGGAAATTACCCTGGAGATTGCCTACTGATCTCAAGTTTTTTAAGGAGATCACTTTAACAACATCTGATCCTGGGAAGAAGAATGCGGTTATAATGGGTAGAAAAACATGGGAGAGTATCCCTCTTGAGAATCGTCCTCTTCCTGGTCGCCTTAATGTTGTTCTAACTCGCTCTGGAAGCTTCGATATTGCAACTGCAGAGAATGTTGTTATATGCGGAAGCATGTCTTCTGCTCTGGAATTGTTAGCTGCTTCTCCTTACTGTCTATCAATTGAGAAAGTATTTGTTATAGGAGGTGGCCAAACATTTAGAGAGGCCCTCAATGCACCTGCATGTGAAGCGATCCACATTACTGAAATTGAGACCAGCATTGACTGCGATACTTTCATGCCTCCAATTGATTCCTCTGTATTTCAGCCATGGTACTCTTCCTTTCCTAGGATGGAGAATGACATTCGCTATTGTTTTACTACATATGTACGAGTAAGGAGTTATTCAGAAGAATCCCTGAGTCAGAATTCTAATCCAGTTTGTGATAGTAGATCTGATTCCTTAAATGAGGTCAAGAACTTTTCTTTTCTTCCAAAAATGATTTTTGAGAGACATGAGGAGTACCTTTATCTCAGACTGGTACAAGATATCATCTCTGAAGGTACTTCTAAGGATGATAGGACTGGAACTGGTACCTTCTCAAAATTTGGTTGCCAGATGAGGTTCAATTTGCGCAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATTAGTGGTTCAACAAATGCTAAGGTGCTGCAGGAAAAAGGCATCCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGCATTGGATTGGCAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAAGTATACTGACATGCATGCTGACTACTCTGGCAAAGGATTTGATCAACTTTTAGATGTTATTAACAAGATAAAGCATAATCCTAATGATCGAAGGATTATTCTCTCAGCTTGGAACCCAGCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCAAATGGGGAGTTATCTTGTCAGATGTATCAGCGATCTGCAGACATGGGATTGGGTGTGCCATTTAACATTGCATCTTATGCTCTCCTGACGTGTATGATTGCTCATGTTTGTGAACTTGTTCCAGGTGATTTTATCCATGTTTTTGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAGGAGCAGCTCCAGAACCTGCCCAAACCTTTTCCAATTTTGGAGATAAATCCCAAGAAGAAGGATATAGATTCTTTTGTGGCTGTTGATTTTAAGCTCATAGGTTATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTGTAA 1578 0.4132 MASDSAVMSNGNVNLQPERQRTYQVVVAATRDMGIGKDGKLPWRLPTDLKFFKEITLTTSDPGKKNAVIMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQTFREALNAPACEAIHITEIETSIDCDTFMPPIDSSVFQPWYSSFPRMENDIRYCFTTYVRVRSYSEESLSQNSNPVCDSRSDSLNEVKNFSFLPKMIFERHEEYLYLRLVQDIISEGTSKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSIGLAEREEGDLGPVYGFQWRHFGAKYTDMHADYSGKGFDQLLDVINKIKHNPNDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFIHVFGDAHVYRNHVRPLQEQLQNLPKPFPILEINPKKKDIDSFVAVDFKLIGYDPHQKIEMKMAV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g4004 525 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 22 199 IPR001796 GO:0004146|GO:0046654
Bisa01g4004 525 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 5 200 - -
Bisa01g4004 525 CDD DHFR 26 198 IPR001796 GO:0004146|GO:0046654
Bisa01g4004 525 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 234 525 IPR036926 -
Bisa01g4004 525 Hamap Thymidylate synthase [thyA]. 242 525 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 CDD TS_Pyrimidine_HMase 245 478 IPR023451 -
Bisa01g4004 525 Gene3D Dihydrofolate Reductase, subunit A 5 201 IPR024072 -
Bisa01g4004 525 PRINTS Thymidylate synthase family signature 458 475 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 PRINTS Thymidylate synthase family signature 402 417 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 PRINTS Thymidylate synthase family signature 283 304 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 PRINTS Thymidylate synthase family signature 420 446 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 PRINTS Thymidylate synthase family signature 376 395 IPR000398 GO:0004799|GO:0006231
Bisa01g4004 525 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 34 56 IPR017925 GO:0004146
Bisa01g4004 525 FunFam Possible thymidylate synthase 236 525 - -
Bisa01g4004 525 PIRSF DHFR-TS 5 525 IPR012262 GO:0004146|GO:0004799|GO:0006730
Bisa01g4004 525 ProSitePatterns Thymidylate synthase active site. 387 415 IPR020940 GO:0004799|GO:0006231
Bisa01g4004 525 PANTHER THYMIDYLATE SYNTHASE 1 45 525 IPR045097 GO:0016741
Bisa01g4004 525 Pfam Dihydrofolate reductase 24 199 IPR001796 GO:0004146|GO:0046654
Bisa01g4004 525 Pfam Thymidylate synthase 245 525 IPR023451 -
Bisa01g4004 525 SUPERFAMILY Dihydrofolate reductase-like 15 199 IPR024072 -
Bisa01g4004 525 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 200 525 IPR036926 -
Bisa01g4004 525 NCBIfam thymidylate synthase 245 525 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g4004 Bisa-ChrBisa01 96385212 96388619 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g4004 01 96385212 96388619 Bisa01g4004 01 96385212 96388619 ECH