Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3418 ATGGCCTCCTCCGTGATCTCCTCCGCCGCCGTCACCACCGTGAGTCGCTCATCTCCGGCTCAGGCCAACATGGTGGCACCATTCACCGGCCTCAAGTCCTCCTCCGGCTTCCCGGTGACCAGAAAGAGCAGTGACATCACTTCCATTGCCAGCAACGGTGGAAGAGTGCAATGCATGAGGGTGTGGCCCACACAAGGGCTGAAGAAGTTCGAGACTCTCTCCTACCTTCCACCGCTCAACGAAGCGGCTTTGGGAAAGGAAGTAGATTACCTGCTGAGGAAGGGATGGATTCCCTGCTTGGAATTTGAGATCGACCAACCATTCGTGTCCCGTGACAACAACAAGTCACCAGGGTACTACGACGGGCACTTCTGGACCATGTGGAAGCTGCCTATGTTCGGATGCAACGACTCGGCTCAGGTGTTGAAGGAGCTCCAGGAGGCCAAGACAACCCACCCCAAAGCCCACATTCGTATCATCGGATTCGACAACAGACGCCAAGTCCAGTGCATCAGTTTCATCGCCTACAGGCCCGAATAA 540 0.5593 MASSVISSAAVTTVSRSSPAQANMVAPFTGLKSSSGFPVTRKSSDITSIASNGGRVQCMRVWPTQGLKKFETLSYLPPLNEAALGKEVDYLLRKGWIPCLEFEIDQPFVSRDNNKSPGYYDGHFWTMWKLPMFGCNDSAQVLKELQEAKTTHPKAHIRIIGFDNRRQVQCISFIAYRPE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3418 179 CDD RuBisCO_small 68 178 IPR000894 -
Bisa01g3418 179 SMART RuBisCO_small_2_a 69 178 IPR000894 -
Bisa01g3418 179 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 179 IPR024681 -
Bisa01g3418 179 Pfam Ribulose bisphosphate carboxylase, small chain 70 178 IPR000894 -
Bisa01g3418 179 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 59 179 - -
Bisa01g3418 179 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 68 179 IPR000894 -
Bisa01g3418 179 Gene3D Ribulose bisphosphate carboxylase, small subunit 59 179 IPR036385 -
Bisa01g3418 179 SUPERFAMILY RuBisCO, small subunit 59 179 IPR036385 -
Bisa01g3418 179 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 43 IPR024680 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 152 178 IPR024681 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 21 38 IPR024681 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 118 147 IPR024681 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 96 111 IPR024681 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 47 65 IPR024681 -
Bisa01g3418 179 PRINTS RuBisCO small subunit signature 68 94 IPR024681 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3418 Bisa-ChrBisa01 80549202 80549957 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g3418 01 80549202 80549957 Bisa01g3418 01 80549202 80549957 ECH