Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3087 ATGTATTTTTCAATGGATTTGAGAAGGCTTTCAAAAAAAGCTAGACCTTCTCCTTTCTTGTCACTCGTCACGCGCCCCTTGACCATGGCGGCATCCACCGTCCAACGCCACCATAGTCACCATCACCTTCAAGGCCACGGCTTTACTCAACCGCCGCCTTCACAGCCCCAGAATCAACTACTACCTTCTGATCAGGGTCTGCTTAATTTGATACCTACTATTCTCTCTAGCGAGGTTCTCGATTCTTCTAAATGCAAAGCACTAATACCCTACTTATCTCCTCATGAATTTGATCACTTATTTCTGTCTAGTAAACCCAATGTGAACCCCAAAACTACTCTTGACTTCTTTTATTTTGCTGCTGGTTTTTCTCAGTTTCGATTCACTGTTCGGTCTTACTGCCTTTTGATTCATTTGCTTCTGGCCTCGAATTTTTTTTCGTCCGCCAGATTGCTTTTGATCCGTTTGATTGACGGAAACTTGCCCGCTTTGTTTGTTAACCATGATAATAGGCACATTGAAATAGCTGTTTCAATGTTGGAGCTGAATACAGTTACAGAAAGGAAACATGATGGATTGGATTTGTTGATTCATGTTTTCTGTACCCAATTTAAGAATTTGGGTCTTCAATCTGCTATTGATATCTTTTACTTATTTGCACGAAAGGGTACATTTCCATCTCAGAAAACGTGCAATTTGTTATTGAGCTCTTTATTGAAGGCTAAAGAACTTCAGAAGTGTTATGAAGTGTTTGAAGATTTTTGTCAAGGTGTTTTACCAGATGTTTACACATGTTCAACTGCAATCAATGCATTCTTTAAGGGAGGCAGGGCTGAGGATGCAATTAGTTTGTTCTTGAAAATGGAGGAGATTGGTATTTCACCTAATGTTGTAACTTACAATAACATGATTGCCGGGCTCTGCAGGAGTGGAAGATTAGAAGAAGCATTTCAATTTAAAGAAAGTATGGTTAAAAGCAAAGTGAAGCCAAGTCTTATCACATATAGTATGCTTATCAGTTCTCTGGTGAAGGTGGAGAAATTTGATGAAGCAAATAGCATTTTGGTAGAAATGTCCAACGTGGGGTTTAATGCAAATGAGTTTATTTATAATACACTGATTGATGGATACTGCAGGAAGGGAAATATGAGTGAAGCAGTGAAGATCTATGATGTCATGTTATCTAAGGGCATGAAACCCAATTCAGTTACTTTGAATGCTCTTTTACAATATTTTTGCAGGAGTAATCAAATGGAGCAAGCTGAGCAAATATTGGAGAAGATACCATTGAGTGGATTATCAATTAGCCAGGATGCATGTGTTTTTGTTATTCACTGGTTATGTAAGAAATCAAGGTTTGATCCTGCCCTCGGATTTGTTAGAAAGTTGTTATTAAGGAGCATCAAGCCTAGCGATAGTATGCTAGCCACATTAATCCGCGGACTTTGTAAGTGTGAAAAACATTCAGAGGCAATTGAACTTTGGTTTAGCCTTGCAGATAATGGTTTTGCAGCCAACACAGTTACCTCAAATGCTCTTCTCCACGGACTTTGTGAACAAGGGGACGTGCAGGAGGTTGTTTTAGTACTCAATAAGATGCTCGAGAGAGGTATGGTATTGGATAGGATCTCATACAACACGCTAATTTTTGGGTGTTGCAGAGGAGGTAAAATCAAAGGTTTCAGGCTCAAGGAAGAGATGGCCAAGCAAGGAATCCAACCAGATATACAAATCTACAATTGCATAATGAGGAGGTTGGTTGATATGGGTAAGATGGATGACGCCAATAAGCTTTTGCACGAAGGCAAACAGAATGGCCTGGTTCCAAATGTATATACATATGCATTGATCATAAGTGGATATTGTAAGTGTGAAAGAATTGAAGATGGTGTAAATTTATTCAATGAATTAGTTAATAATAAAGTAGAGCTTAGTTCTGTTGTTTATAACATACTTATAGCTGCCTATTGCAGAATTGGGAATGTGATAGAAGCCTTCAGACTTCATGATGCCATGAAAAGTAGGGGTATTCCACCAACATGTGCTACATATTCTTCCCTAATACATGGAATGTGCAAAATTGGCTGTGTTGATGAGGCCAAAGATATTTTTGAGGAAATGGAAAAAGAAGGCTTGTTGCCAGATGTTGTATGTTATACTGCACTAATTGGTGGTTATTGTAAGCTTGGCCAGATGGACAGAGTGGGGAGTGTCTTGTTGGAAATGTCTTCAAACAATATACAACCTAATAAAATTACCTACACTATTATGATTGACGGGTACTGCAAATTGGGCAATATGAAAGAAGCAAATAAAATTTTAGGTTTGATGATAGCAAGTGGAATAACACCGGATACCATCACTTATAATGCATTGGTAAATGGACATTGCAAGGAAAGGAAACTACAAGAAGCTTTTCAACTGTGTGATCATATGTCTAGTGGAGGAGTATCATTAGATGAAATTACATTAACCACACTGGTTCATGGATTGCATTCTCCTACAACACTAGCAATCAAGAGTAATTAA 2529 0.3836 MYFSMDLRRLSKKARPSPFLSLVTRPLTMAASTVQRHHSHHHLQGHGFTQPPPSQPQNQLLPSDQGLLNLIPTILSSEVLDSSKCKALIPYLSPHEFDHLFLSSKPNVNPKTTLDFFYFAAGFSQFRFTVRSYCLLIHLLLASNFFSSARLLLIRLIDGNLPALFVNHDNRHIEIAVSMLELNTVTERKHDGLDLLIHVFCTQFKNLGLQSAIDIFYLFARKGTFPSQKTCNLLLSSLLKAKELQKCYEVFEDFCQGVLPDVYTCSTAINAFFKGGRAEDAISLFLKMEEIGISPNVVTYNNMIAGLCRSGRLEEAFQFKESMVKSKVKPSLITYSMLISSLVKVEKFDEANSILVEMSNVGFNANEFIYNTLIDGYCRKGNMSEAVKIYDVMLSKGMKPNSVTLNALLQYFCRSNQMEQAEQILEKIPLSGLSISQDACVFVIHWLCKKSRFDPALGFVRKLLLRSIKPSDSMLATLIRGLCKCEKHSEAIELWFSLADNGFAANTVTSNALLHGLCEQGDVQEVVLVLNKMLERGMVLDRISYNTLIFGCCRGGKIKGFRLKEEMAKQGIQPDIQIYNCIMRRLVDMGKMDDANKLLHEGKQNGLVPNVYTYALIISGYCKCERIEDGVNLFNELVNNKVELSSVVYNILIAAYCRIGNVIEAFRLHDAMKSRGIPPTCATYSSLIHGMCKIGCVDEAKDIFEEMEKEGLLPDVVCYTALIGGYCKLGQMDRVGSVLLEMSSNNIQPNKITYTIMIDGYCKLGNMKEANKILGLMIASGITPDTITYNALVNGHCKERKLQEAFQLCDHMSSGGVSLDEITLTTLVHGLHSPTTLAIKSN 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 506 554 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 295 344 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 645 693 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 366 405 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 784 832 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat family 714 763 IPR002885 -
Bisa01g3087 842 Gene3D Tetratricopeptide repeat domain 746 838 IPR011990 GO:0005515
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 683 716 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 717 750 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 333 366 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 752 786 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 787 821 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 369 401 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 647 681 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 612 645 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 511 541 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Bisa01g3087 842 NCBIfam pentatricopeptide repeat 578 611 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Bisa01g3087 842 Gene3D Tetratricopeptide repeat domain 360 430 IPR011990 GO:0005515
Bisa01g3087 842 Pfam PPR repeat 230 253 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat 477 503 IPR002885 -
Bisa01g3087 842 Pfam PPR repeat 263 293 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Bisa01g3087 842 Gene3D Tetratricopeptide repeat domain 442 601 IPR011990 GO:0005515
Bisa01g3087 842 Gene3D Tetratricopeptide repeat domain 201 359 IPR011990 GO:0005515
Bisa01g3087 842 Gene3D Tetratricopeptide repeat domain 602 745 IPR011990 GO:0005515
Bisa01g3087 842 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 94 415 - -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 574 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Bisa01g3087 842 Pfam Pentatricopeptide repeat domain 562 621 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 680 714 IPR002885 -
Bisa01g3087 842 MobiDBLite consensus disorder prediction 34 59 - -
Bisa01g3087 842 SUPERFAMILY TPR-like 236 413 IPR011990 GO:0005515
Bisa01g3087 842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3087 Bisa-ChrBisa01 68466242 68468770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3087 511 831 Glycosyltransferase AT1G05670 30.675 6.87e-47 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g3087 01 68466242 68468770 Bisa01g3087 01 68466242 68468770 ECH