Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1650 ATGAGACTCCAGTTTTTCTTATTGGCAATTTGCCTATCTATCTCTATCTCCTTCACTCCAATTTCAGCTCGATTATTTCCCAATGTATCCGCCATACCCCCTTGGGTTATAAAAAACGTGACTCCCGGCGCGTGGGACGCCTTCCAGAACTTCACCGGCTGCCGTCCGGGGAATTCCTACGACGGTTTAAATAAGCTCAAAACTTACTTCCACCGCTTCGGCTACATCCCTGACACCCCCTCCAACTTCACTGACGACTTCGACGACGCCCTGGAATCGGCCATTAAGACTTACCAGAAGAACTTCAATCTCAACGTCACCGGCGAGCTCGACCAGAACACTCTGCAGCAGATTATCAGGCCGCGATGCGGCGTTGCCGATATAGTCAACGGCACCAGCACCATGAACTCCGCCAAGGAGAATATCTCGGCTTCCAGCAACAACACGCGCTTCCACACTGTCTCCCATTACACTTACTTTCCCGGAACGCCGACTTGGTCAACCCAAACTCTGACCTACGCGTTCTTGCCGAACAACGGCCTAAGCGACGACGTGAAGAACGTATTCGCCACCGCCTTCGACCGGTGGTCGGAGGTGACGACGCTGACGTTCACGGAGACGGAGTCGTATGAGACGGCGGACATCAGGATAGGATTCTTCCAGGGGGACCATGGGGACGGCGAGCCATTCGACGGCGTTTTGGGGACGCTGGCGCACGCGTTTTCTCCGACGAACGGGAGGTTCCATTTGGACGGTGCGGAGGACTGGGTGGTCTCTGGTGATGTGACGAAGTCGTCGCTGTCGACGGCGGTGGATCTGGAATCGGTGGCGGTGCACGAGATCGGGCACGTGTTAGGGATGGGGCATTCGTCGGTGGAGGAAGCGATCATGTACCCAACGATATCGTCACGGACGAGGAAGGTGAATCTGGCGGACGATGACATTGAAGGGATTCAACGGCTCTATGGTTCGAACCCTAATTACAATGGCACCACGACGACGTCGTCTCAGCAGAACGACTCCAGCCACGGTGGACGCCTCAGCGTGGTGGGATCCACGTGGGGCCCACTCCTTTTGTTAGTTGTGGGATATGCATATTTGATTTTGTAG 1110 0.5514 MRLQFFLLAICLSISISFTPISARLFPNVSAIPPWVIKNVTPGAWDAFQNFTGCRPGNSYDGLNKLKTYFHRFGYIPDTPSNFTDDFDDALESAIKTYQKNFNLNVTGELDQNTLQQIIRPRCGVADIVNGTSTMNSAKENISASSNNTRFHTVSHYTYFPGTPTWSTQTLTYAFLPNNGLSDDVKNVFATAFDRWSEVTTLTFTETESYETADIRIGFFQGDHGDGEPFDGVLGTLAHAFSPTNGRFHLDGAEDWVVSGDVTKSSLSTAVDLESVAVHEIGHVLGMGHSSVEEAIMYPTISSRTRKVNLADDDIEGIQRLYGSNPNYNGTTTTSSQQNDSSHGGRLSVVGSTWGPLLLLVVGYAYLIL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1650 369 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 326 - -
Bisa01g1650 369 FunFam Metalloendoproteinase 1 53 328 - -
Bisa01g1650 369 Pfam Putative peptidoglycan binding domain 64 117 IPR002477 -
Bisa01g1650 369 Gene3D Collagenase (Catalytic Domain) 53 329 IPR024079 GO:0008237
Bisa01g1650 369 SMART col_5 162 324 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bisa01g1650 369 PRINTS Matrixin signature 310 323 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa01g1650 369 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa01g1650 369 PRINTS Matrixin signature 276 301 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa01g1650 369 PRINTS Matrixin signature 189 204 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa01g1650 369 PRINTS Matrixin signature 213 241 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa01g1650 369 PANTHER MATRIX METALLOPROTEINASE 43 333 - -
Bisa01g1650 369 SUPERFAMILY PGBD-like 52 128 IPR036365 -
Bisa01g1650 369 MobiDBLite consensus disorder prediction 323 345 - -
Bisa01g1650 369 CDD ZnMc_MMP 166 323 IPR033739 GO:0008237|GO:0008270
Bisa01g1650 369 Pfam Matrixin 166 323 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1650 Bisa-ChrBisa01 28348451 28349560 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g1650 01 28348451 28349560 Bisa01g1650 01 28348451 28349560 ECH