LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g1582	ATGAGAGGCTTTAGTTTCAGAGGCTTCACATTTATGGTTCTCATTGCAATTCTTGTGTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCAGAGATGTGTCAGCTTCTCTGTCGAAGAAGAAAGGAAAGAACTATGGAAGGAGTCACAACAACCACCATGGTGGAGGATCATCTTCAAAACCAAAGCCTCCATCCTACAAAAGCTCACCATCATCATCACCAAAGGCTCCTCCACCACATAAAAGCATTCCATCAACACCACCCCCAATTCCTAAGCGAAAAAAAGGTAGCCCATCAGCTTCGCCACCTAAAGGTTACAATGTTGGGTCTTCTGCTGTCTTCAATGTCCTAGATTTTGGAGCTAAGGGAGATGGAAGTACTGATGATACAAAGGCATTCCAAGCTGCATGGGCAAGTGCTTGTAAGGTAGAGGCATCAACCATGCTCATTCCAGCAGATTACGTCTTCTTCGTGGGACCCATATCATTCTCGGGACCATACTGCAAAACCAACATAGTTTTTCAGGTTGATGGGACAATTATTGCCCCTACAAACCCCAAGGCTTGGGGCAAAGGATTGTTACAATGGCTGGAATTCACAAAGCTGGTCGGAATTACCATTCAAGGAAAGGGTATCATCGACGGAAGAGGCTCAGTCTGGTGGCAAGACCACCCATTTGATGATCCCATAGATGATGAAGAAAAGCTCATCGTCCCATTAAACAGCACAGTGAGGAGGCCTCCAATGCCGGTTCAAAGTGAGCTGGGAGGGAAAATGCCAATCATCAAACCAACTGCACTGCGATTCTATGGGAGTTTTAATCCAAGGGTCACAGGCATAACAATTCAAAATAGTCCACAGTGCCACCTCAAGTTTGACAATTGCAACGGAGTCCTGGTCCATGATGTGAGCGTTTCATCTCCTGGCAACAGTCCCAACACGGATGGAATTCACCTTCAGAATTCCAAAGATGTGTTGATTTACAGCAGTAAATTAGCATGTGGAGATGACTGCATTTCCATACAAACCGGATGCTCAAATGTATATGTCCACAATGTCAACTGTGGGCCAGGGCATGGAATCAGCATTGGAAGTTTAGGGAAGGATAACACTCGAGCCTGCGTCTCAAACATTACTGTCAGAGATGTCATCATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCTGTACAGGGGGTTCTGTTCTCAAATATACAAGTTTCTGAAGTTCAACTCCCAATTGTGATTGACCAATTCTATTGTGATAAAAGAACATGCATAAACCGAACATCAGCCGTGGCTCTTGCAGGAATCAACTATGAAAGAATAAGGGGGACATACACAGTTAAGCCAGTACACTTTGCCTGTAGTGATAACCTGCCATGTGTAGATGTTTCTTTAACCTCCATTGAGCTAAAACCACTTCAAGAACAATACCACTTATATGATCCATTCTGCTGGCAGACTTTTGGTGAACTAAGAACACCTACAGTTCCCCCAATTGCTTGTCTACAGATTGGGAAGCCATCAAGCAATCGGATTCAGAATGACCATGATTTGTGTTGA	1611	0.4451	MRGFSFRGFTFMVLIAILVWSSNFEACIARRGKHWRQSRDVSASLSKKKGKNYGRSHNNHHGGGSSSKPKPPSYKSSPSSSPKAPPPHKSIPSTPPPIPKRKKGSPSASPPKGYNVGSSAVFNVLDFGAKGDGSTDDTKAFQAAWASACKVEASTMLIPADYVFFVGPISFSGPYCKTNIVFQVDGTIIAPTNPKAWGKGLLQWLEFTKLVGITIQGKGIIDGRGSVWWQDHPFDDPIDDEEKLIVPLNSTVRRPPMPVQSELGGKMPIIKPTALRFYGSFNPRVTGITIQNSPQCHLKFDNCNGVLVHDVSVSSPGNSPNTDGIHLQNSKDVLIYSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRTCINRTSAVALAGINYERIRGTYTVKPVHFACSDNLPCVDVSLTSIELKPLQEQYHLYDPFCWQTFGELRTPTVPPIACLQIGKPSSNRIQNDHDLC	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g1582	536	MobiDBLite	consensus disorder prediction	31	46	-	-
	Bisa01g1582	536	SMART	pbh1	412	433	IPR006626	-
	Bisa01g1582	536	SMART	pbh1	330	351	IPR006626	-
	Bisa01g1582	536	SMART	pbh1	303	329	IPR006626	-
	Bisa01g1582	536	SMART	pbh1	383	404	IPR006626	-
	Bisa01g1582	536	SMART	pbh1	353	373	IPR006626	-
	Bisa01g1582	536	MobiDBLite	consensus disorder prediction	31	114	-	-
	Bisa01g1582	536	SUPERFAMILY	Pectin lyase-like	119	534	IPR011050	-
	Bisa01g1582	536	MobiDBLite	consensus disorder prediction	75	104	-	-
	Bisa01g1582	536	Pfam	Pectate lyase superfamily protein	122	146	IPR024535	-
	Bisa01g1582	536	Gene3D	-	113	524	IPR012334	-
	Bisa01g1582	536	MobiDBLite	consensus disorder prediction	58	74	-	-
	Bisa01g1582	536	ProSitePatterns	Polygalacturonase active site.	360	373	IPR000743	GO:0004650\|GO:0005975
	Bisa01g1582	536	Pfam	Glycosyl hydrolases family 28	271	488	IPR000743	GO:0004650\|GO:0005975
	Bisa01g1582	536	Pfam	Glycosyl hydrolases family 28	151	231	IPR000743	GO:0004650\|GO:0005975
	Bisa01g1582	536	FunFam	polygalacturonase At1g48100	111	521	-	-
	Bisa01g1582	536	PANTHER	-	120	505	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g1582	Bisa-ChrBisa01	27028353	27032831	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g1582	2	536	Glycoside Hydrolase	AT1G60590	66.914	0.0	717

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa01g1582	01	27028353	27032831	Bisa01g1582	01	27028353	27032831	ECH