LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach9g01788	ATGGCTGACGAAGAAGCAAAACCAGCGCCGCATGTAACAGAGAAAGAAGATCCATTTTCACTGCAGCCTCCGGCGGAGTCTGATTTACCCCCTATAACAACCACTTCACCTCTTGAATCTGCTGAGAACAAAGAAGTTCCTCCGCCGCCGGCGTCTGAACTGCCTGTTGCAGAAGCAATTGTTGCTCATGCGGTGGAATCACAGGAAGTGGCAGAGAAAGAGCCACCACCTCCGCCGCCGCAAGCAACTGTAGAGGAGACTGATTTACAAGCGAATTGCTCAGAGGACGTGGGCGTGGTGGCTCAAGATGAGGGATCGAAGCTGGCTGAAGACCGTAAAATTCCTCAGAATTTGGTTTCATTCAAGGAGGAAAGCAACATAGTTGCTGATCTCTCAGATTCTGAAAGAAGAGCCCTTGATGAGCTGAAGCAGCAGGTTCGTGAGGCTTTAGACACTCACCAGATTGATTTTGCCGCACCCAAAGCATCTGAACCCAATCCAAAATCTGAAGAACTCACTTCAGAATCTGAAACGAAACCACCCCATGAGACAAAAATTGAAGAAAACCCATCAAAAGAAGCAGAGGAAGTAGCAAAAGAAGCAGCAACGTCAGCAGCATCCGATGAAGTTTCAATTTGGGGAGTTCCTCTGCTCAAAGATGACAGAAGTGATGTGATTCTGCTCAAGTTCCTCAGAGCCCGAGACTTCAAAGTGAAAGACGCATTTGTGATGCTCAAGAACACTCTTCAGTGGAGGACAGAGTTCAACATCGATGCACTTGTGAATGAAGATCTTGGAGATGATTTGGAGAAAGTGGTGTTCATGCACGGATATGATAGAGAGGGGCATCCTGTGTGTTATAATGTTTATGGAGAGTTTCAAAACAAGGAGTTATATCAAAAGACATTCTCAAATGAAGAAAAAAGAATCAAATTTCTCAGATGGAGAATACAGTTCTTGGAGAGGAGTATTAGGAAGCTGGATTTTAGTCCTGGTGGTGTTTGTACAATTTTCCAAGTTAATGATCTTAAAAATTCTCCGGGACCTGGAAAGAGAGAGCTTCGAATTGCCACCAAACAGGCTTTGCAATTGCTTCAGGACAATTATCCTGAGTTTGTTGCCAAACAGGTTTTCATCAATGTCCCATGGTGGTATCTTGCGTTCTACACCATGATCAGTCCATTCTTGACACAAAGGACCAAAAGCAAATTTGTTTTTTCAGGCCCATCAAAGTCTGCTGAAGCACTTTTCAAGTATATCTCTCCTGAGCAAGTTCCTGTTCAGTATGGTGGCCTAAGTGTAGATTACTGTGACTGTAATCCAGAATTCAGCATATCTGATCCAGTCACTGAGATTCCTATAAAGCCAACAACAAAGCAAACTGTGGAAATCATTATTTATGAGAAATGCGTTATTGTTTGGGAGCTGCGGGTCCCGGGTTGGGAAGTTAGCTATAGTGCTGAGTTCAAGCCTGATGCAAAAGATGGGTATACAATTATTATCCAGAAGGCCACAAAGATGTACCCTAGTGATGAACCTGTGGTGTCAAGTAGCTTTAAAGTTGGGGAACTTGGCAAGATATTGCTCACCATTGACAATCCTACTACAAAAAAGAAGAGGTTTCTGTATAGGTTCAAGGTCAAACCGTACGGTGATTGAGAAA	1663	0.4378	MADEEAKPAPHVTEKEDPFSLQPPAESDLPPITTTSPLESAENKEVPPPPASELPVAEAIVAHAVESQEVAEKEPPPPPPQATVEETDLQANCSEDVGVVAQDEGSKLAEDRKIPQNLVSFKEESNIVADLSDSERRALDELKQQVREALDTHQIDFAAPKASEPNPKSEELTSESETKPPHETKIEENPSKEAEEVAKEAATSAASDEVSIWGVPLLKDDRSDVILLKFLRARDFKVKDAFVMLKNTLQWRTEFNIDALVNEDLGDDLEKVVFMHGYDREGHPVCYNVYGEFQNKELYQKTFSNEEKRIKFLRWRIQFLERSIRKLDFSPGGVCTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMISPFLTQRTKSKFVFSGPSKSAEALFKYISPEQVPVQYGGLSVDYCDCNPEFSISDPVTEIPIKPTTKQTVEIIIYEKCVIVWELRVPGWEVSYSAEFKPDAKDGYTIIIQKATKMYPSDEPVVSSSFKVGELGKILLTIDNPTTKKKRFLYRFKVKPYGD	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach9g01788	552	PRINTS	Cellular retinaldehyde-binding protein signature	226	248	-	-
	Bach9g01788	552	PRINTS	Cellular retinaldehyde-binding protein signature	389	408	-	-
	Bach9g01788	552	FunFam	SEC14 cytosolic factor family protein	267	446	-	-
	Bach9g01788	552	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	262	437	IPR001251	-
	Bach9g01788	552	Coils	Coil	132	152	-	-
	Bach9g01788	552	Pfam	CRAL/TRIO, N-terminal domain	168	247	IPR011074	-
	Bach9g01788	552	ProSiteProfiles	GOLD domain profile.	442	547	IPR009038	-
	Bach9g01788	552	MobiDBLite	consensus disorder prediction	1	88	-	-
	Bach9g01788	552	SMART	CRAL_TRIO_N_2	223	248	IPR011074	-
	Bach9g01788	552	Gene3D	-	125	464	IPR036865	-
	Bach9g01788	552	PANTHER	PATELLIN-1	92	549	IPR044834	GO:0008289
	Bach9g01788	552	SUPERFAMILY	CRAL/TRIO domain	272	440	IPR036865	-
	Bach9g01788	552	MobiDBLite	consensus disorder prediction	27	41	-	-
	Bach9g01788	552	MobiDBLite	consensus disorder prediction	168	199	-	-
	Bach9g01788	552	SMART	sec14_4	267	434	IPR001251	-
	Bach9g01788	552	Pfam	CRAL/TRIO domain	272	431	IPR001251	-
	Bach9g01788	552	SUPERFAMILY	CRAL/TRIO N-terminal domain	127	263	IPR036273	-
	Bach9g01788	552	CDD	SEC14	268	432	IPR001251	-
	Bach9g01788	552	MobiDBLite	consensus disorder prediction	155	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach9g01788	Bach-Chr9	21281640	21283669	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach9g01788	227	426	Acyl Lipid Metabolism Gene Families	AT1G55840	29.858	2.16e-13	69.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach9g01788	-		-	qsa:O6P43_029974	764.992