LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach8g00677	AACGTTTCCTGCAATCCGAAGCTCCAAACAATGAATTGAGTTTTCAGATATCAGAGATTATCATTTCTCGCCTCCTCTGACTCTCTCCGATTTGATCATTGTTTTCAATCGTAATTTCTATGAATTTCTTTTATAGAAATGACAGGACGTCCTCAGCCTCATGATCAGACCTCGTCTGCATCCTCATCTTCCAACAGCAGTGGTAGAAACATATTTAATTTGATCGCACGGAGAGAGATCTCGCCTAGAGCAAAATACGTGCCAAAACGGCACTGGGGAGAAGCTTCTAAATCAAAATCTGTTTCTTGCTCTCGTCCTAAAAATGAAGTGGTGAGAGATGCAAAACATGGTCTCCTCTCATGGGTTGAGGCAGAGTCATTGTGGCATTTGTCAGCCAAATATTGCCCATTGTTGCCACCCCCACGGTCTACTATTGCAGCAGCATTTAGTCCAGATGGGAAAGTGCTTGCCTCCACACATGGTGATCACACAGTAAAGATAATTGATTTTGAAACTGGAAGTTGTTTAAAGGTGTTAATTGGCCACAGGAGGACGCCTTGGGTGGTTAGGTTCCATCCACTGCATCCGCAAATACTGGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAGTATCCCATCATTTCTATCGCCCAATTGCATCCATTGCTTTCCATGCCAAAGGGGAAATACTAGCTGTTGCATCAGGCCACAAGCTATACATATGGCACTACAACAAGAGAGGTGAGGCATCCTCACCAACATTTGTGTTGAAAACAAGACGTTCACTACGGGCTGTGCATTTTCACCCACATGCTGCCCCATATCTTTTAACTGCCGAGGTCAATGATCTTGATTCCTCAGATTCATCAATGACACAGGCAACATCCCTTGGTTATTTACAATATCCTCCGCCAGCTGTTTTTGTCACAAATGTTCATCCTAGAGAACGGATTAGTTTACCCAGTGAACAACCCTTTGTGTCATTACCTTTTTTATCCATGCCTTCATATACTGTAGATGACTCGAGAATAGAAATACAGCATGCTGGTCATGATGTTGGTTCAAGTAGCATGCAAGTTGAATCTTCTGTCTCAGTGCAGTTTCAAGAGGACACAAATGCAACAGAGCAATATGATACTTCAGAATCTCCTATGGAGACATTCTCTGAAATTCCCACCAATTCCCAAACTGGTACAGAATATACTACCTACACTTCTTTCTCCAATGGAATGGGTATTGGCATTAGTAATCTCACAATGGATGATATGGACACTGATGAAACAGAGCCAGTTGAAGGAAGCCAACATGGACACTCTACTGATGTCCATACGTTCAGTGATGAGCTGCATGGACAACCTAGACAAACTATAAATCGTGAGGTTTCCTCTGAGTTTAGTCAATTCCACAATTTTATTCCTCCAAGAGACCAAAGTGGATGGCAATTGCCATCTTTGCATGGACTGTTAATTCCCTCAATGCTTCCTCACATGGGTGTTAGTCGTGACAGTCTAGCTCAACAGATTGGTTCTTCCATCATTACAACTAACCCCTCCACTCATAATGTTGAAGAAGCAATGTTGTCTTCAGCAGTGACTAGCAGCATCAGCACACCAGGAGGGTCTGGGAGATCAGGTTTATGGCATCATTTTCCTCAATCCCGTGGGTCTTTGTCTGATTCTAGCAATCTTCCTGCTTCTCTTAATACTACACATGATGGAACTGATATACAAACGATTATACATCGAATCCAATCAGAACTTGCCACATCAGTGGCAGCTACAGCTGCTGCTGAGCTGCCTTGCACTGTGAAGTTAAGAGTATGGTCACATGATATAAAACATCCTTGTGCCCCGCTGAATGCTGAAAGATGCCGCCTAACCATACCTCATGCTGTCCTCTGTAGTGAAATGGGGGCCCATTTTTCACCATGTGGTAGATTCTTAGCTGCATGTGTTGCATGTATGCTACCTCATATAGAAGCTGATCCAGGATTACAAACTCTACTACACCAGGAGCCTGGAGCTGCAACATCCCCAACTCGACACCCAATCTCAGCACACCAAGTCATATATGAGCTTCGCATATATTCTCTTGAGGAGGCAACATTTGGAACAGTGCTTGCATCACGAGCAATTAGAGCAGCTCATTGCCTGACTTCAATTCAGTTCTCACCCACATCTGAGCATATACTGCTTGCATATGGTCGGCGACATAGTTCTCTTCTCAAAACCATTGTCACTGATGGAGAAACAACGTTACCTATTTATACAGTGTTAGAGGTATACAGAGTCTCAGATATGAAACTTGTCATGGTGCTTCCTAGTGCAGAGGATGAGGTCAATGTGGCATGTTTTCATCCCTTTGCGGGGGGAGGGCTTGTTTATGGAACAAAGGAAGGAAAGCTAAGGGTCCTTCAATATGATGGGGCTCACTCGATGAAAGGCACTGGACTAGGTTACTTACCTGAGGAAAATGTTGTCAGAGTCGGTCAGTGAGCAAGGTTTGGACTCAAATTGGAGTTAGCATTAACTCTAAACGATCTGCTTCACATCATCTGTCTCACTAAGATGGTTGGTAGAGGACTCCCAACCCTCTTCCTCCTTTCTTAGGTTGCATGTCTTGGTGTGGCTGTTGAAGTTCTGAAATGTATGCAAATGCCTATGCAGCTCTCCAAATTCATCATTATTCAAACAAACTAACAACATACCTGACGCTGAGCACATGCAAATGAGTGCTAGATCCTCGCACTCGCAGCAGCAGCGAATGTATATTTTGTATTATTCATGTATGATTAAGGTACTAATGTTGTTCTTTGCTAACACGTTTGTTTTCCTCCACCTTGTTCTCCCCAATCCAAGAGTGGTTACTTCTTTTCATATCCTTTGTAGCCAGATGTTCAGTA	2930	0.4338	MTGRPQPHDQTSSASSSSNSSGRNIFNLIARREISPRAKYVPKRHWGEASKSKSVSCSRPKNEVVRDAKHGLLSWVEAESLWHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDFETGSCLKVLIGHRRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECIVSHHFYRPIASIAFHAKGEILAVASGHKLYIWHYNKRGEASSPTFVLKTRRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTQATSLGYLQYPPPAVFVTNVHPRERISLPSEQPFVSLPFLSMPSYTVDDSRIEIQHAGHDVGSSSMQVESSVSVQFQEDTNATEQYDTSESPMETFSEIPTNSQTGTEYTTYTSFSNGMGIGISNLTMDDMDTDETEPVEGSQHGHSTDVHTFSDELHGQPRQTINREVSSEFSQFHNFIPPRDQSGWQLPSLHGLLIPSMLPHMGVSRDSLAQQIGSSIITTNPSTHNVEEAMLSSAVTSSISTPGGSGRSGLWHHFPQSRGSLSDSSNLPASLNTTHDGTDIQTIIHRIQSELATSVAATAAAELPCTVKLRVWSHDIKHPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTLLHQEPGAATSPTRHPISAHQVIYELRIYSLEEATFGTVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKTIVTDGETTLPIYTVLEVYRVSDMKLVMVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHSMKGTGLGYLPEENVVRVGQ	794

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach8g00677	794	Gene3D	-	54	257	IPR015943	GO:0005515
	Bach8g00677	794	PANTHER	ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1	19	792	-	-
	Bach8g00677	794	SMART	WD40_4	729	769	IPR001680	GO:0005515
	Bach8g00677	794	SMART	WD40_4	126	166	IPR001680	GO:0005515
	Bach8g00677	794	SMART	WD40_4	169	206	IPR001680	GO:0005515
	Bach8g00677	794	SMART	WD40_4	85	123	IPR001680	GO:0005515
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	514	529	-	-
	Bach8g00677	794	ProSiteProfiles	Trp-Asp (WD) repeats profile.	133	175	IPR001680	GO:0005515
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	392	411	-	-
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	389	411	-	-
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	338	360	-	-
	Bach8g00677	794	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	92	771	IPR011047	-
	Bach8g00677	794	Pfam	WD domain, G-beta repeat	100	123	IPR001680	GO:0005515
	Bach8g00677	794	Pfam	WD domain, G-beta repeat	127	166	IPR001680	GO:0005515
	Bach8g00677	794	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	133	171	-	-
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	496	529	-	-
	Bach8g00677	794	MobiDBLite	consensus disorder prediction	1	23	-	-
	Bach8g00677	794	ProSitePatterns	Trp-Asp (WD) repeats signature.	153	167	IPR019775	-
	Bach8g00677	794	FunFam	Activating molecule in BECN1-regulated autophagy protein	80	260	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach8g00677	Bach-Chr8	4479522	4486904	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach8g00677	62	205	Miscellaneous Gene Families	AT5G08390	31.373	5.51e-08	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach8g00677	K17985		-	gmx:100817857	1247.26